Pig Genome Database
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The Expressed Pig Genes

Find and download
Genome elements
Map feature alignments:
Genes, QTL, SNP, etc
Search for genes
Manage your
expression experiment
8,315 QTLs as of
Dec 27, 2012
Iowa Porcine Assembly
TGI, UniGen, etc
Plot trait values
on the pig genome
Comparative maps:
human, rat, cattle, etc
Blast search against
build 10 chromosomes
Tools that support
community activities
Data Repository
Correlation DB
  • Annotation information query for Iowa Porcine Assembly (IPA)
  • The Iowa Porcine Assembly (IPA, version 1) is a novel assembly of approximately 1.6 million unique porcine-expressed sequence reads. Itconsists of 140,087 consensus sequences, the Iowa Tentative Consensus (ITC) sequences, and 103,888 singletons. The IPA has been annotated via transfer of information from homologs identified through sequence alignment to NCBI RefSeq based on top BLASTN alignments.
  • Pig EST Database (ISU)
    In a ISU led multi-state pig EST ptoject (1999-2002), a total of 98,988 pig EST sequences were analyzed to search for homologies among pig EST sequences and human genes using BLAST alignment against 97,1000 human UniGene sequences. The similarity among the EST sequences and pig gene sequences was also determined by BLAST alignment against 2,011 pig gene sequences from Genbank
  • Blast search Iowa Porcine Assembly (integrated ESTs, 2011 data)
  • Blasp search Porcine Gene Indices
  • Blast search NCBI Unigen


© 2003-2024: USA · USDA · NRPSP8 · Program to Accelerate Animal Genomics Applications. Contact: Bioinformatics Team