From rodrigo.gularte ulg.ac.be Wed Mar 7 02:07:25 2012
Subject: Re: create Pedigree applying DATA and huge PEDIGREE files
From: =?iso-8859-1?Q?Rodrigo_Gularte_M=E9rida?=
<rodrigo.gularteulg.ac.be>
To: Multiple Recipients of <angenmapanimalgenome.org>
Date: Wed, 07 Mar 2012 02:07:25 -0600
Hello, There is a package available through Bioconductor called GeneticsPed
that does what you ask for. Here is the website
http://bioconductor.org/...csPed.html .
However, I agree with Gregor, if you have problems building your pedigree
file with Fortran, it is possible that you may have the same problems with
R. Have you tried using a shell script with tools such as awk, cut, paste,
and sed to prepare the pedigree ?
best,
******************************************
Rodrigo Gularte Mérida
Unit of Animal Genomics
GIGA - R -- Université de Liège
rodrigo.gularteulg.ac.be
On 07 Mar 2012, at 08:13, Gregor GORJANC wrote:
> Hi,
>
> On 7 March 2012 07:49, Mahmood Honarvar wrote:
>
>> Hello Dear All I'm looking for the R-code [or any package] to create
>> Pedigree applying DATA and huge PEDIGREE files for Mixed Model Analysis,
>> Including Iterative Queries at determine Generations. I used secateurs
>> design by karin mayer but its including problems with Huge data files. With
>> all respects: Honarvar
>
>
> I am not sure what exactly you want to do and what you were able to achieve
> with Secateurs, but if Fortran program is choking, then any R package will
> very likely have the same problems!
>
> --
> With regards!
>
> ----------------------------------------------------------------------
> University of Ljubljana Asst. Prof. Gregor Gorjanc, PhD
> Biotechnical Faculty www: http://sites.google.com/site/gregorgorjanc
> Animal Science Department blog: http://ggorjan.blogspot.com
> Groblje 3 mail: gregor.gorjanc bf.uni-lj.si
> SI-1230 Domzale fax: +386 (0)1 724 10 04
> Slovenia, Europe tel: +386 (0)1 320 38 61
> ----------------------------------------------------------------------
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