Release 56
(Apr 24, 2025)

QTL 56266 Description:

 Trait Information
Trait name: Age at puberty Vertebrate Trait Ontology: Onset of fertility
Reported name: (n/a) Product Trait Ontology: n/a
Symbol: AGEP Clinical Measurement Ontology: Age of puberty
 QTL Map Information
Chromosome:12
QTL Peak Location:3.29 (cM)
QTL Span:2.43-4.15 (cM)
1.3-2.1 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":rs81342651
Peak:
Lower, "Significant":rs81439116
Lower, "Suggestive":n/a
Marker type:SNP
Analysis type:QTL
Model tested:Mendelian
Test base:n/a
Threshold significance level:Significant
VARIANCE0.84
Dominance effect:n/a
Additive effect:n/a
Associated Gene:n/a
Cis/Trans acting type:
Links:   NCBI GeneDB  |  Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Animals were crossbred gilts derived from Nebraska Index Line (from Large White x Landrace crossbreds) and commercial Large White x Landrace dams inseminated with semen from two unrelated commercial Landrace lines.
     Breeds associated:
    Design:Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for age at puberty. A total of 56,424 SNPs were used for analysis.
    Analysis:A Bayes B model was used.
    Software:GenSel
    Notes: 
    Links:Edit

     Reference
    Authors:Lucot K L, Spangler M L, Trenhaile M D, Kachman S D, Ciobanu D C
    Affiliation:Animal Science Department, University of Nebraska, Lincoln, 68583, NE, USA
    Title:Evaluation of reduced subsets of single nucleotide polymorphisms for the prediction of age at puberty in sows
    Journal:Animal genetics, 2015, 46(4):403-9
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  
    User inputs on reference #26059234
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  • Cite this Data:

    Animal QTLdb: QTL56266 was published in 2015, and was curated into QTLdb on 2015-07-01. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:56266

     

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