| QTL Map Information |
|---|
| Chromosome: | 15 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
55.9-55.9 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs1113283951 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #301786
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were Duroc, Landrace, Yorkshire, and Pietrain pigs. |
| Breeds associated:
|
| Design: | Pigs were genotyped using the low-coverage whole-genome sequencing approach and GWAS were performed for semen traits. |
| Analysis: | GWAS were performed separately for each of the five populations, then meta-analysis was performed across populations. |
| Software: | GLIMPSE2, PLINK v1.9, GTX v2.1.5, fastp v0.20.0, DMU, GEMMA v0.98.5, METASOFT v2.0.0 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Cheng H, Zhang Z Y, Han H, Wei R, Zhao W, Sun Y C, Xu B B, Hou X L, Wang J L, He Y Q, Fu Y, Wang Q S, Pan Y C, Zhang Z, Wang Z |
| Affiliation: | College of Animal Sciences, Zhejiang University, Hangzhou 310058, China; Key Laboratory of Livestock and Poultry Resources Evaluation and Utilization, Ministry of Agriculture and Rural Affairs, Hangzhou 310058, China |
| Title: | Cross-ancestry meta-genome-wide association studies provide insights to the understanding of semen traits in pigs |
| Journal: | Animal : an international journal of animal bioscience, 2024, 18(11): 101331 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | Duroc line 1 |
User inputs on reference #39405960
Add your comments
Note similar findings
Note contradictions
|
