Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of growth traits:
35
Number of QTL / associations found:
4,543
Number of chromosomes where QTL / associations are found:
19
Chi-squared (χ2) test: are growth traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
6218.09090
18
9e-41
1.221429e-40
Chromosome 1
12902.79830
18
9e-41
1.221429e-40
Chromosome 2
190.81825
18
6.80976e-31
8.625696e-31
Chromosome 3
7469.49315
18
9e-41
1.221429e-40
Chromosome 4
2864.71640
18
9e-41
1.221429e-40
Chromosome 5
12.13555
18
0.8401608
8.401608e-01
Chromosome 6
244.80120
18
9.288324e-42
2.941303e-41
Chromosome 7
11142.06625
18
9e-41
1.221429e-40
Chromosome 8
78.14485
18
1.805804e-09
2.018252e-09
Chromosome 9
1268.89980
18
1.910160e-258
3.629304e-257
Chromosome 10
2477.81380
18
9e-41
1.221429e-40
Chromosome 11
65.20185
18
2.877474e-07
3.037334e-07
Chromosome 12
1035.44070
18
1.865951e-208
1.772653e-207
Chromosome 13
560.77210
18
1.655547e-107
6.291079e-107
Chromosome 14
124.00010
18
7.34838e-18
8.726201e-18
Chromosome 15
782.30530
18
1.848260e-154
8.779235e-154
Chromosome 16
1939.40845
18
9e-41
1.221429e-40
Chromosome 17
962.89060
18
5.930341e-193
3.755883e-192
Chromosome 18
2873.34530
18
9e-41
1.221429e-40
Chi-squared (χ2) test: Which of the 35 growth traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Age at slaughter
46.52799
34
0.07444929
1.371434e-01
Average daily gain
185.57999
34
8.755297e-23
4.377648e-22
Average daily ham weight gain
10.9868
34
0.9999377
9.999992e-01
Average daily lean meat gain
40.6789
34
0.1999022
3.331703e-01
Average daily loin weight gain
10.9868
34
0.9999377
9.999992e-01
Body circumference
716.40718
34
9.986268e-129
1.747597e-127
Body depth
38.20246
34
0.2842777
4.522600e-01
Body height
425.14405
34
4.309504e-69
5.027755e-68
Body length
1284.33256
34
5.289427e-248
1.851299e-246
Body mass index
90.19886
34
5.52797e-07
1.612325e-06
Body weight
105.7777
34
2.726525e-09
9.542838e-09
Body weight linear
7.82136
34
0.9999992
9.999992e-01
Body width
26.06668
34
0.8330873
9.999992e-01
Bone mineral content
45.72929
34
0.08623244
1.509068e-01
Bone mineral density
49.68969
34
0.04021348
7.819288e-02
Chest width
52.3977
34
0.02278011
4.690023e-02
Days to 100 kg
131.20189
34
2.390869e-13
9.297824e-13
Days to 105 kg
67.20696
34
0.0005888642
1.472160e-03
Days to 110 kg
70.10011
34
0.0002636745
7.098929e-04
Days to 113 kg
15.225
34
0.9977234
9.999992e-01
Days to 115 kg
27.68664
34
0.7693245
9.999992e-01
Days to 30 kg
23.43431
34
0.9133425
9.999992e-01
Days to 90 kg
29.40375
34
0.6924406
9.999992e-01
Femur bone mineral density
14.41313
34
0.9987
9.999992e-01
Femur length
195.35657
34
1.484871e-24
8.661748e-24
Hip bone length
93.85633
34
1.644938e-07
5.233894e-07
Humerus length
229.36141
34
7.773024e-31
5.441117e-30
Lipid accretion rate
66.79119
34
0.0006595549
1.538961e-03
Loin eye area linear
26.93785
34
0.8000166
9.999992e-01
Physis score
8.00517
34
0.9999989
9.999992e-01
Protein accretion rate
19.35827
34
0.9792748
9.999992e-01
Rump width
35.65775
34
0.3903184
5.939628e-01
Scapula length
65.43932
34
0.0009499334
2.077979e-03
Tibia length
263.20225
34
3.088015e-37
2.702013e-36
Ulna length
173.56255
34
1.238044e-20
5.416443e-20
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
19
χ2
=
53213.142850
Number of traits:
35
df
=
612
Number of QTLs:
4,543
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
