| QTL Map Information |
|---|
| Chromosome: | 6 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
37.8-38.4 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | |
| Lower, "Significant": | rs109861800 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | n/a |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
VARIANCE | 0.54% | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #259429
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were Holstein cows. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina BovineSNP50 BeadChip, with data imputed to 80K, and GWAS was performed for digital cushion thickness. A total of 65,211 SNPs were used for analysis. |
| Analysis: | Single-marker and window-based GWAS were performed. |
| Software: | BLUPF90, POSTGSF90, PLINK |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Barden M, Li B, Griffiths BE, Anagnostopoulos A, Bedford C, Psifidi A, Banos G, Oikonomou G |
| Affiliation: | Department of Livestock and One Health, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Leahurst Campus, Liverpool, CH64 7TE, United Kingdom |
| Title: | Genetic parameters and genome-wide association study of digital cushion thickness in Holstein cows |
| Journal: | Journal of dairy science, 2022, 105(10):8237-8256 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #36028347
Add your comments
Note similar findings
Note contradictions
|
