| QTL Map Information |
|---|
| Chromosome: | 27 |
| QTL Peak Location: | 24.86 (cM) |
| QTL Span: | 24.85-24.87 (cM)
4.7-4.7 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs110896709 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
VARIANCE | 0.05 | | FDR | 0.04 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Holstein and Jersey cattle. |
| Breeds associated:
|
| Design: | Cows were genotyped using the Illumina BovineHD 777K BeadChip. Bulls were genotyped on a variety of SNP panel sizes. GWAS was performed for digital cushion thickness. |
| Analysis: | Associations were assessed using EMMAX algorithms with a mixed model. |
| Software: | SAS, Golden Helix SVS v8.8.3, GCTA |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Stambuk C R, Staiger E A, Heins B J, Huson H J |
| Affiliation: | Department of Animal Science, Cornell University, Ithaca, NY 14853 |
| Title: | Exploring physiological and genetic variation of digital cushion thickness in Holstein and Jersey cows and bulls |
| Journal: | Journal of dairy science, 2020, 103(10): 9177-9194 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | Average measurements of all hind foot digits |
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