References and Citations:

Papers and Abstracts on Making the CateGOrizer:

  1. Zhi-Liang Hu, Jie Bao and James M. Reecy (2007). "A Gene Ontology (GO) Terms Classifications Counter". Plant & Animal Genome XV Conference, San Diego, CA, January 13-17, 2007.
  2. Zhi-Liang Hu, Jie Bao and James M. Reecy (2008) "CateGOrizer: A Web-Based Program to Batch Analyze Gene Ontology Classification Categories". Online Journal of Bioinformatics. 9 (2):108-112.
According to Google Scholar, the CateGOrizer has been cited times as of Dec 21, 2024

Other publications that have cited our work:

  1. Rose Du, Kelan Tantisira, Vincent Carey, Soumyaroop Bhattacharya, Stephanie Metje, Alvin T Kho, Barbara J Klanderman, Roger Gaedigk, Ross Lazarus, Thomas J Mariani, J Steven Leeder, and Scott T Weiss (2009). Platform dependence of inference on gene-wise and gene-set involvement in human lung development. BMC Bioinformatics. 10:189.
  2. Steibel JP, Wysocki M, Lunney JK, Ramos AM, Hu ZL, Rothschild MF, Ernst CW. (2009). Assessment of the swine protein-annotated oligonucleotide microarray. Animal Genetics, 40(6): 883-893.
  3. Stéanie M. Swarbreck1, Erika A. Lindquist, David D. Ackerly and Gary L. Andersen (2010). Analysis of Leaf and Root Transcriptomes of Soil-Grown Avena barbata Plants. Oxford Journals, Life Sciences, Plant and Cell Physiology, Volume52, Issue2, Pp. 317-332.
  4. Lei Zhou, Liu Xinling, Siew Kwan Koh, Li Xiaorong, Roger W Beuerman (2011). Quantitative Proteomic Analysis of Retina in Oxygen-Induced Retinopathy Mice using iTRAQ with 2D NanoLC-nanoESI-MS/MS. JOURNAL OF INTEGRATED OMICS, DOI: 10.5584/jiomics.v2011i2011.36.
  5. Serena Ferraresso, Massimo Milan, Caterina Pellizzari, Nicola Vitulo, Richard Reinhardt, Adelino VM Canario, Tomaso Patarnello and Luca Bargelloni (2010). Development of an oligo DNA microarray for the European sea bass and its application to expression profiling of jaw deformity. BMC Genomics 2010, 11:354.
  6. Benjamin M Nitsche, Jonathan Crabtree, Gustavo C Cerqueira, Vera Meyer, Arthur FJ Ram and Jennifer R Wortman (2011). New resources for functional analysis of omics data for the genus Aspergillus. BMC Genomics 2011, 12:486.
  7. Må Jergil, Maud Forsberg, Hugh Salter, Kenneth Stockling, Anne-Lee Gustafson, Lennart Dencker and Michael Stigson (2011). Short-Time Gene Expression Response to Valproic Acid and Valproic Acid Analogs in Mouse Embryonic Stem Cells. Toxicological Sciences, Volume121, Issue2, Pp. 328-342.
  8. Alessandro Coppe, Jose Martin Pujolar, Gregory E Maes, Peter F Larsen, Michael M Hansen, Louis Bernatchez, Lorenzo Zane, Stefania Bortoluzzi (2010). Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered european eel. BMC Genomics, Volume: 11, Issue: 1, Pages: 635.
  9. Muriel E de Boer, Sandra Berg, Martijn JTN Timmermans, Johan T den Dunnen, Nico M van Straalen, Jacintha Ellers and Dick Roelofs (2011). High throughput nano-liter RT-qPCR to classify soil contamination using a soil arthropod. BMC Molecular Biology 2011, 12:11.
  10. Stephanie Hammond, Jeffrey C Swanberg, Mihailo Kaplarevic and Kelvin H Lee (2011). Genomic sequencing and analysis of a Chinese hamster ovary cell line using Illumina sequencing technology. BMC Genomics 2011, 12:67.
  11. Massimo Milan, Alessandro Coppe, Richard Reinhardt, Leonor M Cancela, Ricardo B Leite, Carlos Saavedra, Claudio Ciofi, Guido Chelazzi, Tomaso Patarnello, Stefania Bortoluzzi and Luca Bargelloni (2011). Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring. BMC Genomics 2011, 12:234.
  12. Yore MM, Kettenbach AN, Sporn MB, Gerber SA, Liby KT (2011). Proteomic Analysis Shows Synthetic Oleanane Triterpenoid Binds to mTOR. PLoS ONE 6(7): e22862. doi:10.1371/journal.pone.0022862.
  13. G. R. Burke, N. A. Moran (2011). Responses of the pea aphid transcriptome to infection by facultative symbionts. Insect Molecular Biology, Volume 20, Issue 3, pages 357-365, June 2011.
  14. Stephen Laurence Byrne, Karine Durandeau, Istvan Nagy and Susanne Barth (2010). Identification of ABC transporters from Lolium perenne L. that are regulated by toxic levels of selenium. Planta, Volume 231, Number 4, 901-911, DOI: 10.1007/s00425-009-1096-y.
  15. Xianyao Li, Christina L. Swaggerty, Michael H. Kogut , Hsin-I Chiang, Ying Wang, Kenneth J. Genovese, Haiqi He, Fiona M. McCarthy, Shane C. Burgess, Igal Y. Pevzner and Huaijun Zhou (2011). Systemic response to Campylobacter jejuni infection by profiling gene transcription in the spleens of two genetic lines of chickens. IMMUNOGENETICS, DOI: 10.1007/s00251-011-0557-1.
  16. J. Satkoski Trask, W.T. Garnica, R.S. Malhi, S. Kanthaswamy, D.G. Smith (2011). High-throughput single-nucleotide polymorphism discovery and the search for candidate genes for long-term SIVmac nonprogression in Chinese rhesus macaques (Macaca mulatta). Journal of Medical Primatology, Volume 40, Issue 4, pages 224-232.
  17. Napachanok Mongkoldhumrongkul, Suresh C. Swain, Suwan N. Jayasinghe, and Stephen Stüaum (2011). Bio-electrospraying the nematode Caenorhabditis elegans: studying whole-genome transcriptional responses and key life cycle parameters. J. R. Soc. Interface 6 April 2010 vol. 7 no. 45 595-601.
  18. G. R. Burke, N. A. Moran (2011). Responses of the pea aphid transcriptome to infection by facultative symbionts. Insect Molecular Biology, Volume 20, Issue 3, pages 357-365.
  19. Shawn T O'Neil, Jason DK Dzurisin, Rory D Carmichael, Neil F Lobo, Scott J Emrich and Jessica J Hellmann (2010). Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon. BMC Genomics 2010, 11:310.
  20. Shila Mortensen, Kerstin Skovgaard, Jakob Hedegaard, Christian Bendixen, Peter M.H. Heegaard (2011). Transcriptional profiling at different sites in lungs of pigs during acute bacterial respiratory infection. Innate Immunity February, vol. 17 no. 1 41-53
  21. J.E. Seeb, C.E. Pascal, E.D. Grau, L.W. Seeb, W.D. Templin, T. Harkins, S.B. Roberts (2011). Transcriptome sequencing and high-resolution melt analysis advance single nucleotide polymorphism discovery in duplicated salmonids. Molecular Ecology Resources, Volume 11, Issue 2, pages 335-348.
  22. Matheus de Souza Gomes, Mohan Kumar Muniyappaa, Sáo Gonçves Carvalhob, Renata Guerra-Sá Charles Spillane (2011). Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni. Genomics, Volume 98, Issue 2, Pages 96-111.
(See Google Scholar for an updated list)