dat_file  chr2.dat *
gen_file  chr2.gen *
ord_file  chr2.ord *
nb_our_alloc  3000000 *
SEX_EQ  1 *
TOL  0.010000 *
PUK_NUM_ORDERS_TOL  6 *
PK_NUM_ORDERS_TOL  8 *
PUK_LIKE_TOL  2.000 *
PK_LIKE_TOL  2.000 *
use_ord_file  1 *
write_ord_file  1 *
use_haps  1 *
ordered_loci 55 68 1 69 33 59 40 66 56 54 50 65  *
inserted_loci 21 22 13 61 18 77 36 58 16 20 49 37 10 71 24 38 28 26 75 31 15 6 35 17 29 62 70 34 44 42 67 5  *


hap_sys0 75 73 72 76 *
hap_sys0 64 63 *
hap_sys0 54 53 *
hap_sys0 44 45 *
hap_sys0 42 41 *
hap_sys0 40 39 *
hap_sys0 24 23 *
hap_sys0 1 3 *
hap_sys0 0 2 4 *
END