CRI-MAP Tutorial - Bibliography & Links

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CRI-MAP tutorial contents:

Manuals: Web & text versions	Web Manual Table of Contents	Tutorial   Practice   Datasets	Formating data with "prepare"	Mapping with "build"	Testing & Extending Maps

There are many resources on the Internet for those of us performing genetic mapping and linkage analysis. Follow the links below to find even more!

Linkage Centres & "Home Pages"

BGA

The CEPH/Genethon Center

Cooperative Human Linkage Center

GDB, the genome database for humans

?. Kramer's Linkage Page

Jurg Ott's Genetic Linkage Page

        including the Linkage Newsletter

Univ. Minnesota Medical Center

Linkage Courses

On-line

        Basic gene mapping course.

Off-line

        HGMP-RC Courses

        Genetic Methods, by Drs. Margaret Pericak-Vance and Jonathan Haines.

        Linkage Software, by Jurg Ott.

Linkage FAQ

WWW version

Linkage Mailing Lists

Fastlink -

        To subscribe, send your request to Alejandro Schaffer, stating your name, EMail address, and the name of your research institution.

Linkage Newsgroup

bionet.molbio.gene-linkage

Linkage Programmes

EBI Linkage and Mapping Software Repository

Genetic Linkage Software Page

NIH repository

Software from both John Attwood and Dave Curtis

LNKTOCRI, for converting pedigree data formatted for Linkage to the CRI-MAP format. By Jillian Blaschak, with modifications by Tara Matise. Available upon request only.

Map Manager 2.6.2

Pedigree Tracker, for the Macintosh, by L. Silver

Genetics-related Pages & etc.

Yahoo's Genetics Info

Human Molecular Genetics Mailing List

        To subscribe, enter only subscribe HUM-MOLGEN first_name last_name in the text of your message

CEPH reference family lymphoblastoid cell lines

BIBLIOGRAPHY (incl. references from CRI-MAP Documentation)

Barker D, Green P, Knowlton R, Schumm J, Lander E, Oliphant A, Willard H, Akots G, Brown V, Gravius T, Helms C, Nelson C, Parker C, Rediker K, Watt D, Weiffenbach B, Donis-Keller H (1987): "Genetic linkage map of human chromosome 7 with 63 DNA markers." Proc. Natl. Acad. Sci. USA 84: 8006-8010.

Bishop, M. J. (1994): "Guide to Human Genome Computing." Academic Press.

Cottingham, R. W. Jr., Idury, R. M., and Schaffer, A. A. (1993): "Faster Sequential Linkage Computations." American Journal of Human Genetics. 53:252-263.

Davies, K. E. (1986): "Human Genetic Diseases - A Practical Approach." IRL Press, Oxford England and Washington, D.C.

Donis-Keller H, Green P, Helms C, Cartinhour S, Weiffenbach B, Stephens K, Keith T, Bowden D, Smith D, Lander E, Botstein D, Akots G, Rediker K, Gravius T, Brown V, Rising M, Parker C, Powers J, Watt D, Kauffman E, Bricker A, Phipps P, Muller-Kahle H, Fulton T, Ng S, Schumm J, Braman J, Knowlton R, Barker D, Crooks S, Lincoln S, Daly M, Abrahamson J (1987): "A genetic linkage map of the human genome." Cell 51: 319-337.

Dracopoli, N. C., Haines, J. L., Korf, B. R., Moir, D.T., Morton, C. C., Seidman, C. E., Seidman, J. G., Smith, D. R. (1994): "Current Protocols in Human Genetics." John Wiley and Sons, Inc., USA.

Goldgar D, Green P, Parry D, Mulvihill J (1989): "Multipoint linkage analysis in Neurofibromatosis Type I: An international collaboration." Am J Human Genetics 44: 6-12.

Green, P. (1988): "Rapid construction of multilocus genetic linkage maps. I. Maximum likelihood estimation." (draft manuscript).

Kernighan, B., Ritchie, D. (1978): "The C programming language." Prentice-Hall.

Khoury, M. J., Beaty, T. H., and Cohen, B. H. (1993): "Fundamentals of Genetic Epidemiology." Oxford University Press.

Lander E, Green P (1987): "Construction of multilocus genetic linkage maps in humans." Proc. Natl. Acad. Sci. USA 84: 2363-2367.

Lathrop, G.M., Lalouel, J.M., Julier, C. , and Ott, J. (1984): "Strategies for Multilocus Analysis in Humans." PNAS. 81:3443-3446.

Lathrop, G.M. and Lalouel, J.M. (1984): "Easy Calculations of LOD Scores and Genetic Risks on Small Computers." American Journal of Human Genetics. 36:460-465.

Lathrop, G.M., Lalouel, J.M., and R. L. White. (1986): "Construction of Human Linkage Maps: Likelihood Calculations for Multilocus Analysis." Genetic Epidemiology. 3:39-52.

Ott, J. (1991): "Analysis of Human Genetic Linkage." Johns Hopkins University Press.

Schaffer, A. A. , Gupta, S. K., Shriram, K., and Cottingham, R. W. Jr. (1994): "Avoiding Recomputation in Linkage Analysis". Human Heredity. 44:225-37.

Spurr, N. et al (1992): "The CEPH Consortium Linkage Map of Human Chromosome 2." Genomics 14:1055-1063.

Terwilliger, J. D. and Ott, J. (1994): "Handbook of Human Genetic Linkage," Johns Hopkins University Press.

Thompson, E. A. (1986): "Pedigree Analysis in Human Genetics." Johns Hopkins University Press, Baltimore and London.