format-version: 1.2
date: 19:05:2009 10:51
saved-by: caripark
auto-generated-by: OBO-Edit 2.0
subsetdef: slim_cattle "ATO Cattle Slim"
subsetdef: slim_chkn "ATO Chicken Slim"
subsetdef: slim_pig "ATO Pig Slim"
default-namespace: ATO_namespace

[Term]
id: ATO:0000003
name: Immune function trait
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true

[Term]
id: ATO:0000004
name: product quality
def: "characteristics related to the ability of a product produced by or obtained from the body of an animal to meet certain standards" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: ID:0000701 ! product trait

[Term]
id: ATO:0000005
name: production trait
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true

[Term]
id: ATO:0000006
name: Reproduction trait
subset: slim_cattle
subset: slim_pig
is_obsolete: true

[Term]
id: ID:0000000
name: conformation
def: "characteristics relating to an organism's overall structure and proportions" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
is_a: MT:0005395 ! other trait
created_by: caripark
creation_date: 2008-11-10T10:09:36Z

[Term]
id: ID:0000001
name: pigmentation
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:09:36Z

[Term]
id: ID:0000005
name: disease resistance
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:12:53Z

[Term]
id: ID:0000006
name: mastitis
def: "inflammation of the parenchyma of the mammary gland" [CP:Cari Park_Iowa State University curator, MeSH:C17.800.090.968, MeSH:C22.196.581]
subset: slim_cattle
relationship: part_of MT:0001881 ! mammary gland physiology
created_by: caripark
creation_date: 2008-11-10T10:12:53Z

[Term]
id: ID:0000007
name: parasite load
def: "number of parasites harbored by an organism" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: ID:0000675 ! response to parasitic infection
created_by: caripark
creation_date: 2008-11-10T10:12:53Z

[Term]
id: ID:0000008
name: parasite resistance
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:12:53Z

[Term]
id: ID:0000009
name: postchallenge traits
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:12:53Z

[Term]
id: ID:0000010
name: red blood cell mass
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:12:53Z

[Term]
id: ID:0000014
name: carcass trait
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:20:24Z

[Term]
id: ID:0000016
name: meat product quality
def: "characteristics related to the ability of meat products to meet certain standards" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: ATO:0000004 ! product quality
created_by: caripark
creation_date: 2008-11-10T10:20:24Z

[Term]
id: ID:0000017
name: feed intake
def: "Amount of feed consumed" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "feed consumption" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:38:24Z

[Term]
id: ID:0000018
name: lifetime production
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:38:24Z

[Term]
id: ID:0000019
name: milk product quality
def: "characteristics related to the ability of milk to meet certain standards" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: ATO:0000004 ! product quality
created_by: caripark
creation_date: 2008-11-10T10:38:24Z

[Term]
id: ID:0000024
name: endocrine
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:44:31Z

[Term]
id: ID:0000025
name: fertility
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:44:31Z

[Term]
id: ID:0000026
name: life history
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:44:31Z

[Term]
id: ID:0000027
name: reproductive organ
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:44:31Z

[Term]
id: ID:0000029
name: 200 day wean weight
def: "Body weight at weaning (approximately 200 days of age)" [CP:Cari Park_Iowa State University curator]
comment: Cattle trait.
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T12:52:15Z

[Term]
id: ID:0000030
name: body weight (400 days)
def: "Body weight at 400 days of age" [CP:Cari Park_Iowa State University curator]
comment: Cattle trait.
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T12:52:15Z

[Term]
id: ID:0000031
name: adjusted weaning weight
comment: Cattle trait.
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T12:52:15Z

[Term]
id: ID:0000032
name: adjusted yearling weight
comment: Cattle trait.
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T12:52:15Z

[Term]
id: ID:0000033
name: average daily gain
def: "change in body weight over a period of time, divided by the number of days in the period" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
is_a: MT:0001731 ! postnatal growth rate
is_a: MT:0005456 ! weight gain
created_by: caripark
creation_date: 2008-11-10T12:52:15Z

[Term]
id: ID:0000035
name: BWF scaled by BWI
def: "Relative body weight (final body weight/initial body weight)" [CP:Cari Park_Iowa State University curator]
comment: Cattle trait.
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T12:52:15Z

[Term]
id: ID:0000036
name: body weight (initial)
def: "Body weight at the beginning of a test period" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T12:52:15Z

[Term]
id: ID:0000037
name: lean to fat ratio
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T12:52:15Z

[Term]
id: ID:0000038
name: body weight (mean)
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T12:52:15Z

[Term]
id: ID:0000039
name: post-weaning average daily gain
def: "Average daily change in body weight following weaning" [CP:Cari Park_Iowa State University curator]
comment: Cattle trait.
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T12:52:15Z

[Term]
id: ID:0000040
name: post-weaning daily gain--pasture
def: "Average daily change in body weight following weaning in animals maintained on pasture" [CP:Cari Park_Iowa State University curator]
comment: Cattle trait.
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T12:52:15Z

[Term]
id: ID:0000041
name: pre-weaning average daily gain
def: "Average daily change in body weight from birth to weaning" [CP:Cari Park_Iowa State University curator]
comment: Cattle trait.
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T12:52:15Z

[Term]
id: ID:0000042
name: length of productive life
def: "length of time during which a livestock animal can be utilized for breeding or production" [CP:Cari Park_Iowa State University curator]
comment: In dairy cows, the length of time a female is producing milk, prior to the age of 84 months
subset: slim_cattle
subset: slim_pig
synonym: "functional herd life" EXACT []
synonym: "longevity" RELATED []
is_a: MT:0005372 ! life span/aging trait
created_by: caripark
creation_date: 2008-11-10T02:40:05Z

[Term]
id: ID:0000061
name: frame score
def: "A numerical rating of cattle skeletal size calculated based on hip height and age.  Indicates the growth pattern and potential mature size of the animal." [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:17:50Z

[Term]
id: ID:0000062
name: chest circumference
def: "circumference of an animal's girth measured posterior to the front legs" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "heart girth" EXACT []
relationship: part_of MT:0004134 ! chest morphology
created_by: caripark
creation_date: 2008-11-10T01:17:50Z

[Term]
id: ID:0000063
name: heart length
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:17:50Z

[Term]
id: ID:0000064
name: hip height
def: "height of an animal measured from the ground to a point on the back directly above the hipbones" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "height at sacrum" EXACT []
synonym: "stature" RELATED []
is_a: MT:0001253 ! body height
created_by: caripark
creation_date: 2008-11-10T01:17:50Z

[Term]
id: ID:0000065
name: hook height
def: "height of an animal measured from the ground to the point of the hip (tuber sacrale)" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: MT:0001253 ! body height
created_by: caripark
creation_date: 2008-11-10T01:17:50Z

[Term]
id: ID:0000066
name: hip width
def: "distance between the points of both hips" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "hook width" EXACT []
relationship: part_of MT:0003956 ! body size
created_by: caripark
creation_date: 2008-11-10T01:17:50Z

[Term]
id: ID:0000067
name: udder morphology
def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the organ in certain species containing two or more mammary glands, each with its own nipple" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: MT:0001119 ! female reproductive anatomy
created_by: caripark
creation_date: 2008-11-10T01:17:50Z

[Term]
id: ID:0000068
name: degree of spotting
def: "the proportion of unpigmented skin (white coat color) on an animal's body" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of ID:0000353 ! spotted coat
created_by: caripark
creation_date: 2008-11-10T01:18:17Z

[Term]
id: ID:0000069
name: percentage decrease in body weight up to day 150 after challenge
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:27:20Z

[Term]
id: ID:0000070
name: white blood cell count
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:27:53Z

[Term]
id: ID:0000071
name: PTA somatic cell score
def: "Predicted transmitting ability for somatic cell score is a measure used to improve mastitis resistance. Bulls with low PTA are expected to have daughters with lower incidence of mastitis than bulls with high PTA." [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:29:25Z

[Term]
id: ID:0000072
name: somatic cell count in milk
def: "the number of somatic cells (leukocytes) per milliliter of milk; a high count is an indicator of mastitis." [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: ID:0000006 ! mastitis
relationship: part_of MT:0004047 ! milk composition
created_by: caripark
creation_date: 2008-11-10T01:29:25Z

[Term]
id: ID:0000073
name: somatic cell score
def: "Transformation of the number of somatic cells in milk, used as an indicator of bacterial infection/mastitis.  SCS=ln(SCC/100,000)+3" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:29:25Z

[Term]
id: ID:0000074
name: parasite detection rate
def: "Number of times parasitic infection is detected in an individual following challenge" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:31:27Z

[Term]
id: ID:0000075
name: parasites-mean of natural logarithm
def: "Mean of natural logarithm (ni + 1), ni = number of parasites detected at day i after challenge" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:31:27Z

[Term]
id: ID:0000076
name: susceptibility to gastrointestinal worms
subset: slim_cattle
synonym: "resistance to gastrointestinal worms" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:32:07Z

[Term]
id: ID:0000077
name: susceptibility to metastrongylus
def: "Likelihood that an organism will develop ill effects from infection with nematodes of the genus Metastrongylus" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "resistance to metastrongylus" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:32:07Z

[Term]
id: ID:0000078
name: susceptibility to trypanosomosis
def: "Likelihood that an organism will develop ill effects from infection with parasitic protozoans of the genus Trypanosoma" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "resistance to trypanosomosis" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:32:07Z

[Term]
id: ID:0000079
name: final packed red blood cell volume
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000080
name: initial packed red blood cell volume
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000081
name: minimum packed red blood cell volume
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000082
name: packed red blood cell volume
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000083
name: PCV variance
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000084
name: PCVF
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000085
name: PCVF minus PCVM
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000086
name: PCVFM
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000087
name: PCVI
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000088
name: PCVI minus PCVF
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000089
name: PCVI minus PCVM
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000090
name: PCVM
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000091
name: percentage decrease in PCV up to day 100 after challenge
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000092
name: percentage decrease in PCV up to day 150 after challenge
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000093
name: adjusted fat thickness
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000094
name: adjusted mature weight
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000095
name: anatomy
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000096
name: body condition score
def: "Scoring system used to estimate energy reserves (fat and muscle) in beef cows.  Scores are based on fat deposition in relation to skeletal features." [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000099
name: fat composition
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000100
name: fat deposition
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000101
name: fatty acid content
def: "Measure of the fatty acids present in a fat sample" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000102
name: meat flavor
def: "characteristics related to the distinctive taste of meat" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
relationship: part_of ID:0000016 ! meat product quality
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000103
name: mature weight
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000104
name: meat color
def: "characteristics related to the color of meat" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
relationship: part_of ID:0000016 ! meat product quality
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000105
name: muscling
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000106
name: meat odor
def: "characteristics related to the distinctive smell of meat" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
relationship: part_of ID:0000016 ! meat product quality
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000107
name: pH
def: "Measurement of muscle pH following slaughter" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000108
name: stiffening
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000109
name: meat texture
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
relationship: part_of ID:0000016 ! meat product quality
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000110
name: shear force
def: "Assessment of meat tenderness based on a measurement of the amount of force (kg) required to shear multiple core samples from a cut of meat" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000111
name: bone weight
def: "weight of one or more of the bones of the skeleton" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
relationship: part_of MT:0003795 ! bone structure
created_by: caripark
creation_date: 2008-11-10T01:44:59Z

[Term]
id: ID:0000112
name: bone yield
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:44:59Z

[Term]
id: ID:0000113
name: carcass dressing
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:44:59Z

[Term]
id: ID:0000114
name: carcass weight
def: "weight of a carcass following slaughter and removal of the head, hide, intestinal tract, and internal organs" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0001259 ! body weight
created_by: caripark
creation_date: 2008-11-10T01:44:59Z

[Term]
id: ID:0000115
name: carcass yield
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:44:59Z

[Term]
id: ID:0000116
name: dressing percentage
def: "The percentage of the live animal that ends up as carcass (=hot carcass weight/body weight at slaughter)" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:44:59Z

[Term]
id: ID:0000117
name: hot carcass weight
def: "hot or un-chilled weight of a carcass following slaughter and removal of the head, hide, intestinal tract, and internal organs" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
is_a: ID:0000114 ! carcass weight
created_by: caripark
creation_date: 2008-11-10T01:44:59Z

[Term]
id: ID:0000118
name: vertebra number
def: "Number of bone segments constituting the spinal column" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:44:59Z

[Term]
id: ID:0000119
name: rib bone fat
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:44:59Z

[Term]
id: ID:0000120
name: rib muscle thickness
def: "distance between the latissimus muscle and pleura membrane measured halfway between the rib ends" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of MT:0002280 ! intercostal muscle morphology
created_by: caripark
creation_date: 2008-11-10T01:44:59Z

[Term]
id: ID:0000121
name: number of lumbar vertebrae
def: "number of spinal column segments in the loin area, between the ribs and the pelvis" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
relationship: part_of MT:0000138 ! vertebrae number
relationship: part_of MT:0003049 ! lumbar vertebrae morphology
created_by: caripark
creation_date: 2008-11-10T01:45:36Z

[Term]
id: ID:0000122
name: number of thoracic vertebrae
def: "number of segments in the middle of the spinal column, which articulate with the ribs" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
relationship: part_of MT:0000138 ! vertebrae number
relationship: part_of MT:0003047 ! thoracic vertebrae morphology
created_by: caripark
creation_date: 2008-11-10T01:45:36Z

[Term]
id: ID:0000123
name: USDA yield grade
def: "Grade used to classify carcasses based on the expected yield of trimmed, boneless major retail cuts.  Calculation is based on external fat thickness, hot carcass weight, kidney, pelvic, and heart fat, and loin muscle area." [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:46:56Z

[Term]
id: ID:0000124
name: backfat
def: "Layer of subcutaneous fat over the back of a pig" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
synonym: "fatback" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:50:29Z

[Term]
id: ID:0000125
name: fat depth
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:50:29Z

[Term]
id: ID:0000126
name: fat thickness
def: "the thickness of a layer of adipose tissue" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "fat depth" EXACT []
is_a: MT:0005452 ! body fat amount
created_by: caripark
creation_date: 2008-11-10T01:50:29Z

[Term]
id: ID:0000127
name: fat trim yield
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:50:29Z

[Term]
id: ID:0000128
name: fat weight
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:50:29Z

[Term]
id: ID:0000129
name: fat yield
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:50:29Z

[Term]
id: ID:0000130
name: kidney, pelvic, and heart fat weight
def: "weight of fat in the body cavity, specifically in the areas of the kidneys, pelvis, and heart" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "internal fat" EXACT []
is_a: MT:0001781 ! white fat amount
created_by: caripark
creation_date: 2008-11-10T01:50:29Z

[Term]
id: ID:0000131
name: marbling
def: "visible intramuscular fat" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
relationship: part_of ID:0000016 ! meat product quality
relationship: part_of MT:0000013 ! fat distribution
created_by: caripark
creation_date: 2008-11-10T01:50:29Z

[Term]
id: ID:0000132
name: retail product yield
def: "yield of trimmed retail cuts obtained from a carcass" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: ID:0000714 ! product weight
created_by: caripark
creation_date: 2008-11-10T01:50:29Z

[Term]
id: ID:0000133
name: rib fat weight
def: "weight of fat dissected from a wholesale rib cut" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: MT:0001781 ! white fat amount
created_by: caripark
creation_date: 2008-11-10T01:50:29Z

[Term]
id: ID:0000134
name: subcutaneous fat
def: "layer of fat lying directly beneath the skin" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
relationship: part_of MT:0000013 ! fat distribution
created_by: caripark
creation_date: 2008-11-10T01:50:29Z

[Term]
id: ID:0000135
name: subcutaneous fat thickness
def: "thickness of the fat layer directly beneath the skin" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
is_a: ID:0000126 ! fat thickness
relationship: part_of ID:0000134 ! subcutaneous fat
created_by: caripark
creation_date: 2008-11-10T01:50:57Z

[Term]
id: ID:0000136
name: adjusted subcutaneous fat thickness between 12th and 13th ribs
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:50:57Z

[Term]
id: ID:0000137
name: back subcutaneous fat thickness
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:56:01Z

[Term]
id: ID:0000138
name: forebelly subcutaneous fat thickness
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:56:01Z

[Term]
id: ID:0000139
name: hind belly subcutaneous fat thickness
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:56:01Z

[Term]
id: ID:0000140
name: loin subcutaneous fat thickness
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:56:01Z

[Term]
id: ID:0000141
name: middle belly subcutaneous fat thickness
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:56:01Z

[Term]
id: ID:0000142
name: shoulder subcutaneous fat thickness
def: "Thickness of the subcutaneous fat on the upper portion of the front leg" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
synonym: "fat depth at shoulder" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:56:01Z

[Term]
id: ID:0000143
name: % USDA choice
def: "Percentage of animals receiving a USDA quality grade of Choice or higher, based on expected palatability.  Grade is based on degree of marbling and animal's physiological age (maturity)" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:59:03Z

[Term]
id: ID:0000144
name: double muscling
def: "Condition caused by mutation of the myostatin (GDF8) gene, which results in significant skeletal muscle hyperplasia and decreased fat deposition" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:59:03Z

[Term]
id: ID:0000145
name: hindquarter muscle weight
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:59:03Z

[Term]
id: ID:0000146
name: longissimus dorsi weight
def: "weight of the longissimus dorsi" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
synonym: "loin weight" EXACT []
synonym: "longissimus muscle weight" EXACT []
is_a: ID:0000706 ! longissimus dorsi morphology
is_a: ID:0000712 ! skeletal muscle weight
created_by: caripark
creation_date: 2008-11-10T01:59:03Z

[Term]
id: ID:0000149
name: rib muscle weight
def: "weight of muscle tissue obtained from a wholesale rib cut" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of MT:0002280 ! intercostal muscle morphology
created_by: caripark
creation_date: 2008-11-10T01:59:03Z

[Term]
id: ID:0000150
name: Warner-Bratzler shear force
def: "Measurement of shear force with precisely defined equipment and sample specifications, including cutting blade thickness, shape, and bevel, and diameter of sample cores" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-12-09T01:53:27Z

[Term]
id: ID:0000151
name: LMA
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:40:05Z

[Term]
id: ID:0000152
name: overall wellness/fitness
def: "a measure of the overall healthfulness of an organism, in relation to the frequency with which medical care is required" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "veterinary treatments" NARROW []
is_a: MT:0005395 ! other trait
created_by: caripark
creation_date: 2008-11-10T02:40:05Z

[Term]
id: ID:0000153
name: milk fat
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:40:37Z

[Term]
id: ID:0000154
name: milk protein
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:40:37Z

[Term]
id: ID:0000155
name: milk yield
def: "amount of milk produced over a given period of time by a lactating mammal" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: ID:0000701 ! product trait
created_by: caripark
creation_date: 2008-11-10T02:40:37Z

[Term]
id: ID:0000156
name: daughter deviation % milk fat
def: "Weighted average of the percentage of fat in the milk of a bull's daughters, adjusted for the merit of their dams" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:43:21Z

[Term]
id: ID:0000157
name: daughter deviation milk fat yield
def: "Weighted average of the amount of fat in the milk of a bull's daughters, adjusted for the merit of their dams" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:43:21Z

[Term]
id: ID:0000158
name: milk fat content
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:43:21Z

[Term]
id: ID:0000159
name: milk fat percentage
def: "The percentage of a cow's milk that is made up of fat" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "milk fat content" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:43:21Z

[Term]
id: ID:0000161
name: milk fat content
def: "amount of fat in milk" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "milk fat yield" EXACT []
relationship: part_of ID:0000019 ! milk product quality
relationship: part_of MT:0004047 ! milk composition
created_by: caripark
creation_date: 2008-11-10T02:43:21Z

[Term]
id: ID:0000162
name: daughter deviation % milk protein
def: "Weighted average of the percentage of protein in the milk of a bull's daughters, adjusted for the merit of their dams" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:45:00Z

[Term]
id: ID:0000163
name: daughter deviation milk protein yield
def: "Weighted average of the amount of protein in the milk of a bull's daughters, adjusted for the merit of their dams" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:45:00Z

[Term]
id: ID:0000164
name: milk protein percentage
def: "Percentage of milk that is made up of protein" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:45:00Z

[Term]
id: ID:0000165
name: milk protein content
def: "amount of protein in milk" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "milk protein yield" EXACT []
relationship: part_of ID:0000019 ! milk product quality
relationship: part_of MT:0004047 ! milk composition
created_by: caripark
creation_date: 2008-11-10T02:45:00Z

[Term]
id: ID:0000166
name: PTA % milk protein
def: "Predicted transmitting ability for the percentage of milk made up of protein (takes into account information from both parents and progeny)" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:45:00Z

[Term]
id: ID:0000167
name: 305 days milk yield
def: "Amount of milk produced by a cow over a 305 day lactation period" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:46:06Z

[Term]
id: ID:0000168
name: 3rd year total milk yield
def: "Total milk produced by a cow during her third lactation" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:46:06Z

[Term]
id: ID:0000169
name: 5th year total milk yield
def: "Total milk produced by a cow during her fifth lactation" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:46:06Z

[Term]
id: ID:0000170
name: average daily milk yield
def: "Average amount of milk produced per day by a cow" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:46:06Z

[Term]
id: ID:0000171
name: milk yield-other
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:46:06Z

[Term]
id: ID:0000172
name: follicle stimulating hormone
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:50:56Z

[Term]
id: ID:0000173
name: gonadrotropin releasing hormone level
def: "level of the peptide hormone that is produced in the hypothalamus and stimulates the release of follicle stimulating hormone and leutenizing hormone from the anterior pituitary gland" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
synonym: "leutenizing hormone releasing hormone level" EXACT []
is_a: MT:0003953 ! hormone level
created_by: caripark
creation_date: 2008-11-10T02:50:56Z

[Term]
id: ID:0000174
name: luteinizing hormone
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:50:56Z

[Term]
id: ID:0000175
name: progesterone
subset: slim_cattle
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:50:56Z

[Term]
id: ID:0000176
name: prostaglandins
subset: slim_cattle
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:50:56Z

[Term]
id: ID:0000177
name: 56 days non-return rate
def: "The proportion of females that must be re-bred within 56 days following insemination." [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000178
name: 90 days non-return rate
def: "The proportion of females that must be re-bred within 90 days following insemination." [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000179
name: abortions
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000180
name: offspring mortality rate
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000181
name: offspring born alive
def: "number of offspring, not including stillborn" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
synonym: "prenatal survival" EXACT []
synonym: "total number born alive" EXACT []
relationship: part_of MT:0002161 ! fertility/fecundity
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000182
name: offspring born alive, %
def: "Percentage of offspring born alive (not stillborn)" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000183
name: offspring weaned
def: "number of offspring that survive to weaning" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "% survival to weaning" EXACT []
relationship: part_of MT:0002161 ! fertility/fecundity
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000184
name: delivery ease
def: "tendency of an animal to have more or fewer problems at delivery than average" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of MT:0002907 ! parturition
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000186
name: conception rate
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000187
name: dystocia
def: "difficult labor or delivery" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of MT:0002907 ! parturition
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000188
name: early fetal abortion rate
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000189
name: offspring born
def: "total number born, including stillborn animals" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
synonym: "total number born" EXACT []
relationship: part_of MT:0002161 ! fertility/fecundity
created_by: caripark
creation_date: 2008-12-10T10:22:09Z

[Term]
id: ID:0000190
name: oestrus intensity
def: "the ability of the female to display oestrus" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "heat intensity" EXACT []
relationship: part_of MT:0001927 ! oestrous cycle (sensu Rodentia)
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000191
name: hydrops
def: "Accumulation of fluid (edema) in the fetus" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "hydrops fetalis" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000192
name: inseminations per service period
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000193
name: ovulation rate
def: "frequency of ovulation, as determined by the number of corpora lutea in the ovary" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
relationship: part_of MT:0001928 ! ovulation
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000194
name: parity of dam
def: "Number of times a dam has given birth" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000195
name: pregnancy rate
def: "measure of the ability of a female to become pregnant" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "conception rate" EXACT []
synonym: "non-return rate" EXACT []
relationship: part_of MT:0001921 ! fertility
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000196
name: non-return rate
def: "Proportion of females that must be re-bred following insemination" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-12-16T02:50:41Z

[Term]
id: ID:0000197
name: stillbirth
def: "offspring that are either born dead or die within 24 hours of birth" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
relationship: part_of MT:0002161 ! fertility/fecundity
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000198
name: time of conception
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000199
name: twinning rate
def: "production of two offspring from a single pregnancy" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of MT:0002161 ! fertility/fecundity
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000200
name: type of birth
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000201
name: development time
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:00:43Z

[Term]
id: ID:0000202
name: PTA type
def: "An estimate of the genetic superiority for conformation that a bull will transmit to its offspring" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:00:43Z

[Term]
id: ID:0000203
name: female measurements
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:01:22Z

[Term]
id: ID:0000204
name: male measurements
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:01:22Z

[Term]
id: ID:0000205
name: teat length
def: "average length of the teats" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: MT:0006078 ! nipple morphology
created_by: caripark
creation_date: 2008-11-10T03:02:18Z

[Term]
id: ID:0000206
name: teat number
def: "total number of teats/nipples on a female" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
synonym: "nipple number" EXACT []
is_a: MT:0006078 ! nipple morphology
created_by: caripark
creation_date: 2008-11-10T03:02:18Z

[Term]
id: ID:0000207
name: accessory sperm
def: "additional spermatazoa retained in the zona pellucida of the oocyte after penetration of the first sperm during fertilization" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
is_a: MT:0005410 ! fertilization
created_by: caripark
creation_date: 2008-11-10T03:03:07Z

[Term]
id: ID:0000208
name: retrograde sperm
def: "sperm that migrate back into the vagina following intrauterine insemination" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of MT:0005410 ! fertilization
created_by: caripark
creation_date: 2008-11-10T03:03:07Z

[Term]
id: ID:0000209
name: retrograde sperm loss
subset: slim_cattle
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:03:07Z

[Term]
id: ID:0000210
name: scrotal circumference
def: "circumference of the external sac of skin that encloses the testes" [ISBN:0-683-40008-8 Stedman's Medical Dictionary\, 27th edition]
subset: slim_cattle
relationship: part_of MT:0002669 ! scrotum morphology
created_by: caripark
creation_date: 2008-11-10T03:03:07Z

[Term]
id: ID:0000211
name: sex drive
subset: slim_cattle
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:03:07Z

[Term]
id: ID:0000212
name: sperm activity score
subset: slim_cattle
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:03:07Z

[Term]
id: ID:0000213
name: sperm counts
subset: slim_cattle
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:03:07Z

[Term]
id: ID:0000214
name: sperm quality
subset: slim_cattle
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:03:07Z

[Term]
id: ID:0000216
name: birth assistance
def: "necessity of assistance during delivery of offspring" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
relationship: part_of MT:0002907 ! parturition
created_by: caripark
creation_date: 2008-11-10T03:04:56Z

[Term]
id: ID:0000217
name: age at first breeding
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:04:56Z

[Term]
id: ID:0000218
name: age at puberty
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:04:56Z

[Term]
id: ID:0000219
name: structural soundness
def: "Soundness of legs, feet, penis, and prepuce" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:04:56Z

[Term]
id: ID:0000319
name: average daily gain on weaning
def: "Average daily change in body weight from birth to weaning" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
synonym: "pre-weaning average daily gain" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:42:29Z

[Term]
id: ID:0000337
name: body weight (birth)
def: "Body weight at birth" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
synonym: "birth weight" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:48:27Z

[Term]
id: ID:0000339
name: body weight (weaning)
def: "Body weight at weaning" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
synonym: "weaning weight" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:48:27Z

[Term]
id: ID:0000353
name: spotted coat
def: "presence of spots on an animal's coat" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: MT:0002075 ! coat color
created_by: caripark
creation_date: 2008-11-11T01:01:13Z

[Term]
id: ID:0000385
name: total vertebrae number
def: "total number of bone segments constituting the spinal column" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
relationship: part_of MT:0000138 ! vertebrae number
created_by: caripark
creation_date: 2008-11-11T01:16:14Z

[Term]
id: ID:0000480
name: intramuscular fat weight
def: "weight of the fat present within skeletal muscle, determined through either petroleum-ether or detergent extraction or near-infrared transmission analysis" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
is_a: MT:0001781 ! white fat amount
relationship: part_of ID:0000016 ! meat product quality
created_by: caripark
creation_date: 2008-11-11T02:54:44Z

[Term]
id: ID:0000574
name: longissimus muscle area
def: "cross-sectional area of the loin muscle (longissimus dorsi)" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
synonym: "loin eye area" EXACT []
synonym: "loin muscle area" EXACT []
synonym: "rib eye area" EXACT []
is_a: ID:0000706 ! longissimus dorsi morphology
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000618
name: meat tenderness
def: "the ease with which meat is broken down during mastication" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
synonym: "tenderness score" EXACT []
relationship: part_of ID:0000109 ! meat texture
created_by: caripark
creation_date: 2008-11-11T04:15:56Z

[Term]
id: ID:0000620
name: feed conversion ratio
def: "Ratio of amount of feed consumed to body weight gain" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:18:56Z

[Term]
id: ID:0000649
name: birth interval
def: "time interval between birth of consecutive offspring" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
relationship: part_of MT:0002907 ! parturition
created_by: caripark
creation_date: 2008-11-11T04:35:38Z

[Term]
id: ID:0000651
name: gestation length
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:35:38Z

[Term]
id: ID:0000662
name: residual feed intake
def: "difference between actual feed intake and the expected feed requirements for maintenance of body weight and for weight gain" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: MT:0005449 ! food intake
created_by: caripark
creation_date: 2009-03-06T02:22:41Z

[Term]
id: ID:0000663
name: susceptibility to M. paratuberculosis infection
namespace: Trait.ontology
def: "Likelihood that an organism will be infected with Mycobacterium avium subspecies paratuberculosis, the bacterium that causes Johne's disease in ruminants" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2009-03-06T02:30:59Z

[Term]
id: ID:0000675
name: response to parasitic infection
def: "the body's reaction to invasion and multiplication of parasites in its tissues, or the body's reaction to components of or toxins produced by parasites" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0005025 ! response to infection
created_by: caripark
creation_date: 2009-03-30T03:33:42Z

[Term]
id: ID:0000680
name: weight loss in response to infection
def: "loss of weight as a result of the invasion and multiplication of microorganisms, or due to the body's reaction to components of or toxins produced by pathogenic microorganisms" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: MT:0001263 ! weight loss
is_a: MT:0005025 ! response to infection
created_by: caripark
creation_date: 2009-03-31T03:39:50Z

[Term]
id: ID:0000701
name: product trait
def: "any measurable or observable characteristic of a product produced by or obtained from the body of an animal" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000001 ! Trait
created_by: caripark
creation_date: 2009-04-06T02:14:59Z

[Term]
id: ID:0000702
name: udder cleft
def: "upward extension and depth of the suspensory ligament separating the two halves of the udder" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of ID:0000067 ! udder morphology
created_by: caripark
creation_date: 2009-04-23T08:43:06Z

[Term]
id: ID:0000703
name: udder depth
def: "distance between udder floor and tarsal joint (point of the hock), viewed from the side" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of ID:0000067 ! udder morphology
created_by: caripark
creation_date: 2009-04-23T08:43:06Z

[Term]
id: ID:0000704
name: rear udder height
def: "distance from the udder floor to the point at the top where it joins the body wall" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of ID:0000067 ! udder morphology
created_by: caripark
creation_date: 2009-04-23T08:43:06Z

[Term]
id: ID:0000705
name: rear udder width
def: "width of the udder at the top of the rear udder attachment" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of ID:0000067 ! udder morphology
created_by: caripark
creation_date: 2009-04-23T08:43:06Z

[Term]
id: ID:0000706
name: longissimus dorsi morphology
namespace: Trait.ontology
def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the muscle of the back which is the intermediate and largest of the continuations of the Sacrospinalis" [ISBN:1587341026 "Gray's Anatomy"]
subset: slim_cattle
subset: slim_pig
is_a: MT:0004248 ! epaxial muscle morphology
created_by: caripark
creation_date: 2009-04-23T01:15:57Z

[Term]
id: ID:0000712
name: skeletal muscle weight
def: "weight of one or more of the striated muscles attached to the skeleton" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0003398 ! skeletal muscle size
is_a: MT:0004233 ! muscle weight
created_by: caripark
creation_date: 2009-05-01T04:13:32Z

[Term]
id: ID:0000714
name: product weight
def: "weight of a product produced by or obtained from the body of an animal" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: ID:0000701 ! product trait
created_by: caripark
creation_date: 2009-05-04T03:19:20Z

[Term]
id: ID:0000722
name: milk energy yield
def: "the energy content of milk; may be based on a combination of fat, protein, lactose, ash, and water content" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of ID:0000019 ! milk product quality
created_by: caripark
creation_date: 2009-05-06T11:33:11Z

[Term]
id: ID:0000723
name: testes volume
def: "volume of the male reproductive glands" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of MT:0001148 ! testes size
created_by: caripark
creation_date: 2009-05-06T11:41:01Z

[Term]
id: ID:0000726
name: angularity
def: "conformation of the animal's back, withers, and neck, viewed from behind" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "dairy form" EXACT []
is_a: ID:0000000 ! conformation
created_by: caripark
creation_date: 2009-05-06T03:13:00Z

[Term]
id: ID:0000727
name: teat placement
def: "alignment of the teats in relation to each other" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: MT:0006078 ! nipple morphology
created_by: caripark
creation_date: 2009-05-06T03:19:16Z

[Term]
id: ID:0000730
name: height at withers
def: "height of an animal measured from the ground to the high point on the back, between the shoulder blades" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: MT:0001253 ! body height
created_by: caripark
creation_date: 2009-05-07T11:05:57Z

[Term]
id: ID:0000731
name: chest width
def: "width of the chest, viewed from the front" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "strength" RELATED []
relationship: part_of MT:0004134 ! chest morphology
created_by: caripark
creation_date: 2009-05-07T12:48:20Z

[Term]
id: ID:0000732
name: chest depth
def: "dorsal-ventral dimension of the chest, measured directly behind the front legs" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of MT:0004134 ! chest morphology
created_by: caripark
creation_date: 2009-05-07T12:59:41Z

[Term]
id: ID:0000733
name: heel depth
def: "vertical distance from the ground to the hairline at the back of the hoof" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of MT:0004271 ! paw/hand/foot/hoof morphology
created_by: caripark
creation_date: 2009-05-07T01:17:19Z

[Term]
id: ID:0000734
name: hoof diagonal
def: "distance from the tip of the hoof to the hairline at the back of the hoof" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "foot diagonal" EXACT []
relationship: part_of MT:0004271 ! paw/hand/foot/hoof morphology
created_by: caripark
creation_date: 2009-05-07T01:17:19Z

[Term]
id: ID:0000735
name: hoof angle
def: "angle at which the hoof wall meets the ground" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "foot angle" EXACT []
relationship: part_of MT:0004271 ! paw/hand/foot/hoof morphology
created_by: caripark
creation_date: 2009-05-07T01:17:19Z

[Term]
id: ID:0000736
name: temperament
def: "general attitude or characteristic reactions of an organism exhibited toward another organism" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: MT:0002557 ! social/conspecific interaction
created_by: caripark
creation_date: 2009-05-07T01:31:27Z

[Term]
id: ID:0000737
name: hind leg set
def: "squareness of the hind legs in relation to the body; may be assessed from the side or from behind" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "rear leg set" EXACT []
relationship: part_of MT:0000556 ! hindlimb morphology
created_by: caripark
creation_date: 2009-05-07T01:44:48Z

[Term]
id: ID:0000738
name: conformation of feet and legs
def: "assessment of the overall structure and proportions of the feet and legs" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: ID:0000000 ! conformation
is_a: MT:0002109 ! limb morphology
created_by: caripark
creation_date: 2009-05-07T01:53:41Z

[Term]
id: ID:0000739
name: rump morphology
def: "any measurable or observable characteristic related to the shape or structure of the hindquarters" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: MT:0002089 ! postnatal growth/weight/body size
created_by: caripark
creation_date: 2009-05-07T02:23:12Z

[Term]
id: ID:0000740
name: rump width
def: "distance between the caudal protrusions of the pelvis, viewed from behind" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "thurl width" EXACT []
relationship: part_of ID:0000739 ! rump morphology
created_by: caripark
creation_date: 2009-05-07T02:27:08Z

[Term]
id: ID:0000741
name: rump angle
def: "slope of the topline of the rump, between the cranial and caudal protrusions of the pelvic bone, viewed from the side" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of ID:0000739 ! rump morphology
created_by: caripark
creation_date: 2009-05-07T02:27:08Z

[Term]
id: MT:0000001
name: Trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig

[Term]
id: MT:0000003
name: adipose tissue morphology
namespace: Trait.ontology
alt_id: MT:0000011
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "adipose tissue abnormalities" EXACT []
is_a: MT:0005375 ! adipose tissue trait

[Term]
id: MT:0000013
name: fat distribution
namespace: Trait.ontology
subset: slim_cattle
subset: slim_pig
is_a: MT:0000003 ! adipose tissue morphology

[Term]
id: MT:0000137
name: vertebrae morphology
namespace: Trait.ontology
alt_id: MT:0001538
def: "malformed bony segment of the spinal column" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_pig
synonym: "abnormal vertebrae" EXACT []
synonym: "vertebra defect" EXACT []
is_a: MT:0002114 ! axial skeleton morphology

[Term]
id: MT:0000138
name: vertebrae number
namespace: Trait.ontology
def: "missing bony segments of the spinal column" [J:35802]
subset: slim_cattle
subset: slim_pig
synonym: "absence of vertebrae" EXACT []
is_a: MT:0000137 ! vertebrae morphology

[Term]
id: MT:0000179
name: blood chemistry
namespace: Trait.ontology
alt_id: MT:0001546
def: "anomalous concentrations of proteins, minerals, nutrients, gases, or other substances in the blood" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "blood chemistry abnormalities" EXACT []
is_a: MT:0005428 ! clinical chemistry

[Term]
id: MT:0000217
name: white blood cell count
namespace: Trait.ontology
alt_id: MT:0001587
def: "anomalies in the number of leukocytes" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_pig
synonym: "abnormal WBC cell" EXACT []
synonym: "abnormal white blood cell number" EXACT []
synonym: "leukocyte count abnormalities" EXACT []
synonym: "white blood cell count abnormalities" EXACT []
synonym: "white blood cell number abnormalities" EXACT []
is_a: MT:0000716 ! immune system cell morphology
is_a: MT:0002429 ! blood cell morphology/development

[Term]
id: MT:0000221
name: WBC count
namespace: Trait.ontology
def: "fewer than normal numbers of WBCs" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_pig
synonym: "decreased leukocyte count" EXACT []
synonym: "decreased WBC number" EXACT []
synonym: "leukocytopenia" EXACT []
synonym: "leukopenia" EXACT []
synonym: "lymphopenia" EXACT []
is_a: MT:0000217 ! white blood cell count

[Term]
id: MT:0000245
name: erythropoiesis
namespace: Trait.ontology
alt_id: MT:0001608
def: "atypical process of red blood cell formation" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8, tc:Teresa Chu_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
synonym: "abnormal erythrocytopoiesis" EXACT []
synonym: "erythropoiesis abnormalities" EXACT []
is_a: MT:0002123 ! hematopoiesis

[Term]
id: MT:0000367
name: coat/ hair morphology
namespace: Trait.ontology
def: "anomalous color, structure, growth, or texture of the hair" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_pig
synonym: "abnormal coat/ hair" EXACT []
synonym: "coat/ hair abnormalities" EXACT []
synonym: "coat/ hair anomalies" EXACT []
is_a: MT:0005393 ! skin/coat/nails/feathers trait

[Term]
id: MT:0000545
name: limbs/digits/tail morphology
namespace: Trait.ontology
def: "morphological or developmental anomaly of the digits, autopod, limbs, or tail" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal extremities" EXACT []
synonym: "abnormal extremity morphology" EXACT []
synonym: "extremities abnormalities" EXACT []
synonym: "extremities defects" EXACT []
is_a: MT:0005371 ! limbs/digits/tail trait

[Term]
id: MT:0000556
name: hindlimb morphology
namespace: Trait.ontology
def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the posterior extremeties" [tc:Teresa Chu_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "hindlimb abnormalities" EXACT []
is_a: MT:0002109 ! limb morphology

[Term]
id: MT:0000627
name: mammary gland morphology
namespace: Trait.ontology
def: "malformation of the milk-secreting gland that lies within the breast; usually rudimentary in males" [J:70183]
subset: slim_cattle
subset: slim_pig
synonym: "abnormal mammary glands" EXACT []
is_a: MT:0001119 ! female reproductive anatomy
is_a: MT:0002163 ! gland morphology

[Term]
id: MT:0000653
name: sex gland morphology
namespace: Trait.ontology
def: "anomalous structure of any of the organized aggregations of cells that function as secretory or excretory organs and are associated with reproduction" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_pig
synonym: "abnormal sex glands" EXACT []
is_a: MT:0002163 ! gland morphology

[Term]
id: MT:0000685
name: immune system morphology
namespace: Trait.ontology
def: "morphological anomalies in the organs or cells associated with the development and formation of lymphocytes" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "immune system abnormalities" EXACT []
synonym: "lymphoid system abnormalities" EXACT []
synonym: "lymphopoietic system abnormalities" EXACT []
is_a: MT:0005387 ! immune system trait

[Term]
id: MT:0000716
name: immune system cell morphology
namespace: Trait.ontology
def: "anomalous structure, development, or number of immune cells" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
comment: new pslim term
subset: slim_cattle
subset: slim_pig
synonym: "abnormal immune cell" EXACT []
synonym: "immune system: cellular abnormalities" EXACT []
is_a: MT:0000685 ! immune system morphology

[Term]
id: MT:0000759
name: skeletal muscle morphology
namespace: Trait.ontology
def: "anomalous structure of any of the striated muscle fibers connected at either or both extremities with the bony framework of the body" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal skeletal muscle" EXACT []
synonym: "skeletal muscle abnormalities" EXACT []
is_a: MT:0002108 ! muscle morphology

[Term]
id: MT:0001116
name: gonad size
namespace: Trait.ontology
def: "reduced size of the testis or the ovary" [J:34193, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_pig
synonym: "hypogonad" EXACT []
synonym: "hypogonadism" EXACT []
is_a: MT:0002211 ! primary sex determination

[Term]
id: MT:0001119
name: female reproductive anatomy
namespace: Trait.ontology
def: "anomalous structure of the organs associated with producing offspring in the gender that bears the offspring" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_pig
is_a: MT:0002160 ! reproductive system morphology

[Term]
id: MT:0001145
name: male reproductive anatomy
namespace: Trait.ontology
def: "anomalous structure of the organs associated with producing offspring in the gender that produces spermatozoa" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_pig
is_a: MT:0002160 ! reproductive system morphology

[Term]
id: MT:0001146
name: testis morphology
namespace: Trait.ontology
def: "anomalous structure of the male reproductive glands" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_pig
synonym: "abnormal gonad" EXACT []
synonym: "abnormal testes" EXACT []
is_a: MT:0000653 ! sex gland morphology
is_a: MT:0001145 ! male reproductive anatomy

[Term]
id: MT:0001148
name: testes size
namespace: Trait.ontology
def: "increased size of the male reproductive glands" [J:63229, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_pig
synonym: "enlarged testis" EXACT []
synonym: "macroorchidism" EXACT []
is_a: MT:0001116 ! gonad size
is_a: MT:0001146 ! testis morphology

[Term]
id: MT:0001186
name: pigmentation trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0001253
name: body height
namespace: Trait.ontology
def: "anomalous shoulder to floor distance compared to controls" [dlb:Donna Burkart_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_pig
xref: GO:0040007
xref: GO:0040014
is_a: MT:0003956 ! body size

[Term]
id: MT:0001259
name: body weight
namespace: Trait.ontology
def: "anomaly in average weight compared to controls" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0002089 ! postnatal growth/weight/body size

[Term]
id: MT:0001263
name: weight loss
namespace: Trait.ontology
def: "progressive reduction of body weight below normal average for age" [J:45400]
subset: slim_cattle
subset: slim_chkn
is_a: MT:0001259 ! body weight

[Term]
id: MT:0001431
name: eating behavior
namespace: Trait.ontology
alt_id: MT:0001430
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0002069 ! eating/drinking behavior

[Term]
id: MT:0001547
name: lipid level
namespace: Trait.ontology
def: "anomalous concentrations of fat-soluble substances (molecules composed of carbon and hydrogen and are characteristically insoluble in water) in the body" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0002118 ! lipid homeostasis

[Term]
id: MT:0001731
name: postnatal growth rate
namespace: Trait.ontology
def: "anomaly in reaching a developmental stage or stages after birth" [il:Ira Lu_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0002089 ! postnatal growth/weight/body size

[Term]
id: MT:0001764
name: homeostasis
namespace: Trait.ontology
def: "anomaly in the state of equilibrium in the body with respect to various functions and to chemical composition of the fluids and tissues" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "homeostasis abnormalities" EXACT []
is_a: MT:0005376 ! homeostasis/metabolism trait

[Term]
id: MT:0001781
name: white fat amount
namespace: Trait.ontology
alt_id: MT:0000007
subset: slim_cattle
subset: slim_pig
synonym: "abnormal white fat" EXACT []
is_a: MT:0002970 ! white fat morphology
is_a: MT:0005452 ! body fat amount

[Term]
id: MT:0001784
name: fluid regulation
namespace: Trait.ontology
def: "anomalous control of intracellular and/or extracellular fluid" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
is_a: MT:0001764 ! homeostasis

[Term]
id: MT:0001785
name: edema
namespace: Trait.ontology
alt_id: MT:0001338
def: "an accumulation of an excessive amount of watery fluid in cells or intercellular tissues" [J:54065, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
synonym: "oedema" EXACT []
is_a: MT:0001784 ! fluid regulation

[Term]
id: MT:0001790
name: immune system physiology
namespace: Trait.ontology
alt_id: MT:0001789
def: "deviation from the normal function of the immune system" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
comment: pslim term (new)
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "Immune System" EXACT []
synonym: "immune system/response abnormalities" EXACT []
synonym: "immune system: response/ function abnormalities" EXACT []
xref: GO:0006955
is_a: MT:0005387 ! immune system trait

[Term]
id: MT:0001793
name: susceptibility to infection
namespace: Trait.ontology
alt_id: MT:0002548
def: "a change in the likelihood that an organism will develop ill effects from a pathogenic invasion or from components of or toxins produced by pathogens" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_pig
synonym: "altered resistance to infection" EXACT []
is_a: MT:0005025 ! response to infection

[Term]
id: MT:0001881
name: mammary gland physiology
namespace: Trait.ontology
def: "aberrant function of the milk-secreting gland that lies within the breast" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_pig
synonym: "abnormal mammary gland function" EXACT []
synonym: "mammary gland abnormalities" EXACT []
is_a: MT:0002164 ! gland physiology
is_a: MT:0003699 ! female reproductive system physiology

[Term]
id: MT:0001882
name: lactation
namespace: Trait.ontology
alt_id: MT:0001383
def: "atypical production of milk from the mammary gland" [J:51296]
subset: slim_cattle
subset: slim_pig
synonym: "lactation abnormalities" EXACT []
synonym: "lactation defects" EXACT []
is_a: MT:0001881 ! mammary gland physiology

[Term]
id: MT:0001919
name: reproductive system physiology
namespace: Trait.ontology
def: "anomaly in the function of the organs associated with producing offspring" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "reproductive system physiology anomalies" EXACT []
is_a: MT:0005389 ! reproductive system trait

[Term]
id: MT:0001921
name: fertility
namespace: Trait.ontology
alt_id: MT:0001372
def: "diminished ability to produce live offspring" [J:65030]
subset: slim_cattle
subset: slim_pig
synonym: "decreased fecundity" EXACT []
synonym: "semi-sterile" EXACT []
synonym: "semisterile" EXACT []
is_a: MT:0002161 ! fertility/fecundity

[Term]
id: MT:0001927
name: oestrous cycle (sensu Rodentia)
namespace: Trait.ontology
def: "failure of or aberrant timing of the sexual cycle of female animals" [J:34193, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_pig
synonym: "abnormal estrous cycle" EXACT []
synonym: "abnormal estrus cycle" EXACT []
is_a: MT:0003699 ! female reproductive system physiology

[Term]
id: MT:0001928
name: ovulation
namespace: Trait.ontology
def: "aberration in the release of an ovum from a rupturing Graafian follicle, normally regulated by a surge in luteinizing hormone" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_pig
is_a: MT:0001927 ! oestrous cycle (sensu Rodentia)

[Term]
id: MT:0001929
name: gametogenesis
namespace: Trait.ontology
def: "defective formation or differentiation of germ cells" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator, J:42324, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0002160 ! reproductive system morphology

[Term]
id: MT:0001937
name: sexual maturation
namespace: Trait.ontology
def: "a delay or a block in the development of the sexual organs at a given age" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0002212 ! secondary sex determination

[Term]
id: MT:0002069
name: eating/drinking behavior
namespace: Trait.ontology
comment: pslim term
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
xref: MGI:2173574
is_a: MT:0005386 ! behavior/neurological trait

[Term]
id: MT:0002075
name: coat color
namespace: Trait.ontology
alt_id: MT:0000368
def: "irregular or unusual pigmentation of the hair in relation to control animals" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_pig
synonym: "coat: color anomalies" EXACT []
xref: MGI:2173541
is_a: MT:0000367 ! coat/ hair morphology
is_a: MT:0001186 ! pigmentation trait

[Term]
id: MT:0002089
name: postnatal growth/weight/body size
namespace: Trait.ontology
alt_id: MT:0001252
def: "increased or decreased average body size, weight or growth characteristic abnormalities manifesting after birth" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: phenoslim term
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal trunk/ body shape" EXACT []
synonym: "growth/weight/body size abnormality: postnatal" EXACT []
synonym: "trunk/ body shape abnormalities" EXACT []
xref: GO:0040007
xref: GO:0040014
xref: MGI:2173534
is_a: MT:0005378 ! growth/size trait

[Term]
id: MT:0002108
name: muscle morphology
namespace: Trait.ontology
alt_id: MT:0000728
alt_id: MT:0000758
def: "abnormal development of muscle tissue resulting in morphological abnormality" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal muscle" EXACT []
synonym: "abnormal musculature" EXACT []
synonym: "muscle abnormalities" EXACT []
synonym: "musculature abnormalities" EXACT []
synonym: "musculature: muscle dysmorphology" EXACT []
xref: MGI:2173558
is_a: MT:0005369 ! muscle trait

[Term]
id: MT:0002109
name: limb morphology
namespace: Trait.ontology
alt_id: MT:0000546
def: "form, structure, or number of limbs" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal limb" EXACT []
synonym: "extremities: limb dysmorphology" EXACT []
synonym: "limb abnormalities" EXACT []
xref: MGI:2173549
is_a: MT:0000545 ! limbs/digits/tail morphology

[Term]
id: MT:0002114
name: axial skeleton morphology
namespace: Trait.ontology
def: "abnormal development of vertebral, spinal or sternal bones resulting in morphological abnormality" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_pig
synonym: "skeletal: axial defects" EXACT []
xref: MGI:2173562
is_a: MT:0005508 ! skeleton morphology

[Term]
id: MT:0002118
name: lipid homeostasis
namespace: Trait.ontology
def: "anomaly in the state of equilibrium in the body with respect to lipids in the fluids and tissues" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "metabolism: abnormal lipid homeostasis" EXACT []
xref: MGI:2173578
is_a: MT:0001764 ! homeostasis

[Term]
id: MT:0002123
name: hematopoiesis
namespace: Trait.ontology
alt_id: MT:0000236
alt_id: MT:0000241
alt_id: MT:0001600
alt_id: MT:0001604
alt_id: MT:0001605
alt_id: MT:0002402
def: "abnormal development of the enucleated fetal and adult erythrocytes that develop in the aorta, genital ridge and mesonephros region and later in the fetal and adult liver" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal blood development" EXACT []
synonym: "abnormal definitive hematopoiesis" EXACT []
synonym: "abnormal hematogenesis" EXACT []
synonym: "abnormal hematosis" EXACT []
synonym: "abnormal hemogenesis" EXACT []
synonym: "abnormal hemopoiesis" EXACT []
synonym: "abnormal sanguification" EXACT []
synonym: "blood development abnormalities" EXACT []
synonym: "deregulated hematopoiesis" EXACT []
synonym: "hematology: hematopoietic anomalies" EXACT []
synonym: "hematopoiesis abnormalities" EXACT []
synonym: "myeloid stem cell abnormalities" EXACT []
xref: MGI:2173583
is_a: MT:0002429 ! blood cell morphology/development

[Term]
id: MT:0002124
name: red blood cell
namespace: Trait.ontology
def: "anomaly in the structure or maintenance of erythrocytes or oxygen-transporting material in the blood" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_chkn
synonym: "abnormal erythrocyte" EXACT []
synonym: "hematology: abnormal red blood cell count/anemia" EXACT []
xref: MGI:2173584
is_a: MT:0000245 ! erythropoiesis

[Term]
id: MT:0002132
name: respiratory system morphology
namespace: Trait.ontology
alt_id: MT:0001174
def: "anomalous structure of pulmonary tissues" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "respiratory system abnormalities" EXACT []
synonym: "respiratory system: dysmorphology" EXACT []
xref: MGI:2173592
is_a: MT:0005388 ! respiratory system trait

[Term]
id: MT:0002160
name: reproductive system morphology
namespace: Trait.ontology
alt_id: MT:0001114
alt_id: MT:0001115
def: "structural or developmental anomaly of any of the tissues involved in the reproductive system" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal reproductive anatomy" EXACT []
synonym: "abnormal reproductive system" EXACT []
synonym: "reproductive system abnormalities" EXACT []
synonym: "reproductive system defects" EXACT []
synonym: "reproductive system: dysmorphology" EXACT []
xref: MGI:2173620
is_a: MT:0005389 ! reproductive system trait

[Term]
id: MT:0002161
name: fertility/fecundity
namespace: Trait.ontology
alt_id: MT:0001920
def: "reduced ability or inability to produce live offspring" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal fecundity" EXACT []
synonym: "reproductive system: fertility/fecundity anomalies" EXACT []
xref: MGI:2173621
is_a: MT:0001919 ! reproductive system physiology

[Term]
id: MT:0002163
name: gland morphology
namespace: Trait.ontology
alt_id: MT:0000594
def: "abnormal development of any glandular tissue resulting in morphological abnormality" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_pig
synonym: "abnormal glands" EXACT []
synonym: "gland abnormalities" EXACT []
synonym: "glands: dysmorphology" EXACT []
xref: MGI:2173623
is_a: MT:0005379 ! endocrine/exocrine gland trait

[Term]
id: MT:0002164
name: gland physiology
namespace: Trait.ontology
alt_id: MT:0001733
alt_id: MT:0001738
alt_id: MT:0002692
def: "altered glandular secretion not due to anatomical defect" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_pig
synonym: "abnormal endocrine gland function" EXACT []
synonym: "abnormal endocrine system physiology" EXACT []
synonym: "abnormal gland function" EXACT []
synonym: "endocrine system physiology abnormalities" EXACT []
synonym: "gland function abnormalities" EXACT []
synonym: "glands: functional anomalies" EXACT []
xref: MGI:2173624
is_a: MT:0005379 ! endocrine/exocrine gland trait

[Term]
id: MT:0002192
name: hydrops fetalis
namespace: Trait.ontology
def: "an abnormal accumulation of serous fluid in fetal tissues" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
synonym: "fetal edema" EXACT []
is_a: MT:0001785 ! edema

[Term]
id: MT:0002210
name: sex determination
namespace: Trait.ontology
alt_id: MT:0001936
def: "anomaly of primary or secondary sexual development or characteristics" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal reproductive system development" EXACT []
synonym: "abnormal sexual differentiation" EXACT []
is_a: MT:0002160 ! reproductive system morphology

[Term]
id: MT:0002211
name: primary sex determination
namespace: Trait.ontology
def: "aberrant gonadal development resulting in either abnormal or absent gonads or the development of gonads inconsistent with the chromosomal sex" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator, llw2:Linda Washburn_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_pig
synonym: "abnormal gonad development" EXACT []
is_a: MT:0002210 ! sex determination

[Term]
id: MT:0002212
name: secondary sex determination
namespace: Trait.ontology
def: "gonadal development may or may not be normal, and the phenotype of the animal outside the gonad does not match chromosomal sex or is ambiguous" [llw2:Linda Washburn_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0002210 ! sex determination

[Term]
id: MT:0002269
name: muscle size
namespace: Trait.ontology
def: "a wasting of muscle tissue resulting in a derangement of the muscle fibers; occurs with age, immobilization, weightlessness, malnutrition or denervation" [cml:Cathleen M. Lutz_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "muscle atrophy" EXACT []
is_a: MT:0002108 ! muscle morphology

[Term]
id: MT:0002278
name: respiratory muscle morphology
namespace: Trait.ontology
def: "structural anomaly of any of the muscles involved in breathing" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_pig
is_a: MT:0002132 ! respiratory system morphology

[Term]
id: MT:0002280
name: intercostal muscle morphology
namespace: Trait.ontology
def: "anomaly in the respiratory muscles that arise from the lower border of one rib and insert into the upper border of the adjoining rib" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
synonym: "abnormal intercostal muscles" EXACT []
is_a: MT:0002278 ! respiratory muscle morphology
is_a: MT:0003358 ! hypaxial muscle morphology

[Term]
id: MT:0002292
name: gestational length
namespace: Trait.ontology
def: "anomaly in the usual duration of time between when a fertilized egg implants in the wall of the uterus and the birth of offspring" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_pig
is_a: MT:0003699 ! female reproductive system physiology

[Term]
id: MT:0002396
name: hematopoietic system morphology/development
namespace: Trait.ontology
def: "any structural or developmental anomaly of the blood cells or the organs associated with the development and formation of blood cells" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal blood morphology" EXACT []
synonym: "abnormal hemopoietic system morphology/development" EXACT []
synonym: "hematopoietic organ abnormalities" EXACT []
is_a: MT:0005397 ! hematopoietic system trait

[Term]
id: MT:0002411
name: susceptibility to bacterial infection
namespace: Trait.ontology
def: "reduced likelihood that an organism will develop ill effects from a bacterial infection or from components of or toxins produced by bacteria" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_pig
synonym: "increased resistance to bacterial infection" EXACT []
is_a: MT:0001793 ! susceptibility to infection

[Term]
id: MT:0002429
name: blood cell morphology/development
namespace: Trait.ontology
alt_id: MT:0000178
alt_id: MT:0000205
alt_id: MT:0001576
alt_id: MT:0002545
def: "anomalous structure, differentiation, or number of any of the cells found in the blood" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "blood cell abnormalities" EXACT []
synonym: "blood cell defects" EXACT []
is_a: MT:0002396 ! hematopoietic system morphology/development

[Term]
id: MT:0002557
name: social/conspecific interaction
namespace: Trait.ontology
alt_id: MT:0001351
subset: slim_cattle
subset: slim_chkn
synonym: "abnormal social behavior" EXACT []
synonym: "abnormal socialization" EXACT []
synonym: "neurological/behavioral: social/conspecific interaction anomalies" EXACT []
is_a: MT:0005386 ! behavior/neurological trait

[Term]
id: MT:0002596
name: hematocrit
namespace: Trait.ontology
alt_id: MT:0000206
alt_id: MT:0001578
def: "greater or less than the average percentage of a volume of a blood sample occupied by red blood cells" [MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_chkn
synonym: "hematocrit traits" EXACT []
synonym: "packed cell volume" EXACT []
is_a: MT:0002124 ! red blood cell

[Term]
id: MT:0002669
name: scrotum morphology
namespace: Trait.ontology
def: "malformation of the external sac of skin that encloses the testes" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_pig
is_a: MT:0001145 ! male reproductive anatomy

[Term]
id: MT:0002673
name: sperm count
namespace: Trait.ontology
def: "increased or decreased numbers of spermatozoa" [pvb:Pierre Vanden Borre_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
synonym: "abnormal sperm number" EXACT []
is_a: MT:0001929 ! gametogenesis

[Term]
id: MT:0002674
name: sperm motility
namespace: Trait.ontology
def: "anomalies in the mobility of the spermatozoa" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
is_a: MT:0001929 ! gametogenesis

[Term]
id: MT:0002683
name: onset of fertility
namespace: Trait.ontology
def: "age at which animals develop the ability to produce live offspring" [llw2:Linda Washburn_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "age at first breeding" NARROW []
synonym: "age at first egg" NARROW []
synonym: "age at puberty" EXACT []
synonym: "age at sexual maturity" EXACT []
is_a: MT:0001937 ! sexual maturation
is_a: MT:0002161 ! fertility/fecundity

[Term]
id: MT:0002773
name: circulating luteinizing hormone level
namespace: Trait.ontology
def: "lower than normal levels in the bloodstream of LH, the hormone that regulates steroid production by the interstitial cells of the testis and the ovary" [J:35132, MeSH:National Library of Medicine_Medical Subject Headings, pvb:Pierre Vanden Borre_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "decreased serum levels of LH" EXACT []
synonym: "decreased serum levels of luteinizing hormone" EXACT []
synonym: "decreased serum levels of lutropin" EXACT []
is_a: MT:0003361 ! circulating gonadotropin level
is_a: MT:0003969 ! luteinizing hormone level
is_a: MT:0005116 ! circulating pituitary hormone level

[Term]
id: MT:0002790
name: circulating follicle stimulating hormone level
namespace: Trait.ontology
def: "less than expected blood concentration of the hormone that, in females, stimulates the graafian follicles of the ovary and assists in follicular maturation and the secretion of estradiol; in the male it stimulates the epithelium of the seminiferous tubules and is partly responsible for spermatogenesis" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "decreased serum levels of follicle stimulating hormone" EXACT []
synonym: "decreased serum levels of follitropin" EXACT []
synonym: "decreased serum levels of FSH" EXACT []
synonym: "decreased serum levels of gametokinetic hormone" EXACT []
is_a: MT:0003361 ! circulating gonadotropin level
is_a: MT:0003967 ! follicle stimulating hormone level
is_a: MT:0005116 ! circulating pituitary hormone level

[Term]
id: MT:0002907
name: parturition
namespace: Trait.ontology
def: "defect in the process of labor and delivery in female animals" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_pig
is_a: MT:0003699 ! female reproductive system physiology

[Term]
id: MT:0002970
name: white fat morphology
namespace: Trait.ontology
subset: slim_cattle
subset: slim_pig
is_a: MT:0000003 ! adipose tissue morphology

[Term]
id: MT:0003047
name: thoracic vertebrae morphology
namespace: Trait.ontology
def: "malformation of any or all of the thirteen bony segments of the spine located anterior to the lumbar vertebrae and posterior to the cervical vertebrae" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_pig
is_a: MT:0000137 ! vertebrae morphology

[Term]
id: MT:0003049
name: lumbar vertebrae morphology
namespace: Trait.ontology
def: "malformation of any or all of the six bony segments of the spine located anterior to the sacral vertebrae and posterior to the thoracic vertebrae" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_pig
is_a: MT:0000137 ! vertebrae morphology

[Term]
id: MT:0003358
name: hypaxial muscle morphology
namespace: Trait.ontology
def: "malformation of the muscles derived from the lateral myotome and lateral portion of the dermomyotome; these include the thoracic intercostal and abdominal muscles, limb muscles and superficial back muscles, as well as the diaphragm and the tip of the tongue" [PMID:1591996]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal limb muscle morphology" EXACT []
is_a: MT:0000759 ! skeletal muscle morphology

[Term]
id: MT:0003361
name: circulating gonadotropin level
namespace: Trait.ontology
def: "aberrant blood concentration of the peptide hormones that stimulate gonadal functions such as gametogenesis and sex steroid hormone production in the ovary and the testis" [MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0005418 ! circulating hormone level

[Term]
id: MT:0003398
name: skeletal muscle size
namespace: Trait.ontology
def: "greater than average dimensions of one or more of the muscles of the skeleton" [J:94134, smb:Susan M. Bello_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000759 ! skeletal muscle morphology

[Term]
id: MT:0003699
name: female reproductive system physiology
namespace: Trait.ontology
def: "anomaly in the function of the female organs associated with producing offspring" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_pig
is_a: MT:0001919 ! reproductive system physiology

[Term]
id: MT:0003795
name: bone structure
namespace: Trait.ontology
def: "anomaly in the composite material or the layered arrangement of the bony endoskeleton of the body" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_pig
is_a: MT:0005508 ! skeleton morphology

[Term]
id: MT:0003953
name: hormone level
namespace: Trait.ontology
def: "aberrant tissue or circulating concentration of any substance, usually a peptide or steroid, that has a specific metabolic regulatory effect on the activity or behavior of cells expressing a receptor for the hormone" [MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0001764 ! homeostasis

[Term]
id: MT:0003956
name: body size
namespace: Trait.ontology
def: "anomaly in the average body weight, height and/or length of an organism compared to controls" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_pig
is_a: MT:0002089 ! postnatal growth/weight/body size

[Term]
id: MT:0003965
name: pituitary hormone level
namespace: Trait.ontology
alt_id: MT:0005125
def: "aberration in the blood or tissue concentration of any of the hormones secreted by the pituitary" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0003953 ! hormone level

[Term]
id: MT:0003967
name: follicle stimulating hormone level
namespace: Trait.ontology
def: "anomalous concentration of the hormone that, in females, stimulates the graafian follicles of the ovary and assists in follicular maturation and the secretion of estradiol; in the male it stimulates the epithelium of the seminiferous tubules and is partly responsible for spermatogenesis" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0003965 ! pituitary hormone level

[Term]
id: MT:0003969
name: luteinizing hormone level
namespace: Trait.ontology
def: "aberrant levels in the bloodstream of LH, the hormone that regulates steroid production by the interstitial cells of the testis and the ovary" [MeSH:National Library of Medicine_Medical Subject Headings, pvb:Pierre Vanden Borre_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal LH level" RELATED []
synonym: "abnormal lutropin level" RELATED []
is_a: MT:0003965 ! pituitary hormone level

[Term]
id: MT:0004047
name: milk composition
namespace: Trait.ontology
def: "anomaly in the protein or lipid content or the appearance of milk" [smb:Susan M. Bello_Mouse Genome Informatics Curator]
subset: slim_cattle
relationship: part_of MT:0001882 ! lactation

[Term]
id: MT:0004134
name: chest morphology
namespace: Trait.ontology
def: "malformation of the part of the body between the neck and the abdomen" [J:59168, smb:Susan M. Bello_Mouse Genome Informatics Curator]
subset: slim_cattle
synonym: "abnormal thorax morphology" EXACT []
is_a: MT:0002089 ! postnatal growth/weight/body size

[Term]
id: MT:0004233
name: muscle weight
namespace: Trait.ontology
def: "any anomaly in the average muscle weight" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0002269 ! muscle size

[Term]
id: MT:0004244
name: spontaneous abortion
namespace: Trait.ontology
def: "the natural or accidental termination of a pregnancy at a stage where the embryo or the fetus is incapable of surviving independently of the mother" [anna:Anna V. Anagnostopoulos_Mouse Genome Informatics Curator]
subset: slim_cattle
synonym: "miscarriage" EXACT []
is_a: MT:0003699 ! female reproductive system physiology

[Term]
id: MT:0004248
name: epaxial muscle morphology
namespace: Trait.ontology
def: "malformation of the muscles derived from the medial myotome; includes the intrinsic back muscles" [PMID:1591996]
subset: slim_cattle
subset: slim_pig
is_a: MT:0000759 ! skeletal muscle morphology

[Term]
id: MT:0004271
name: paw/hand/foot/hoof morphology
namespace: Trait.ontology
def: "malformation of the pedal or prehensile extremity of vertebrates" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_pig
synonym: "abnormal paw morphology" EXACT []
synonym: "abnormal paws" EXACT []
synonym: "paw abnormalities" RELATED []
is_a: MT:0002109 ! limb morphology

[Term]
id: MT:0005025
name: response to infection
namespace: Trait.ontology
def: "the body's reaction to invasion and multiplication of microorganisms in its tissues, or the body's reaction to components of or toxins produced by pathogenic microorganisms" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0001790 ! immune system physiology

[Term]
id: MT:0005026
name: susceptibility to parasitic infection
namespace: Trait.ontology
def: "reduced likelihood that an organism will develop ill effects from a parasitic infection or from components of or toxins produced by parasites" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
synonym: "increased resistance to parasitic infection" EXACT []
is_a: MT:0001793 ! susceptibility to infection

[Term]
id: MT:0005116
name: circulating pituitary hormone level
namespace: Trait.ontology
alt_id: MT:0005115
def: "aberration in the blood concentration of any of the hormones secreted by the pituitary" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal circulating level of pituitary hormone" EXACT []
synonym: "abnormal serum level of pituitary hormone" EXACT []
is_a: MT:0003965 ! pituitary hormone level
is_a: MT:0005418 ! circulating hormone level

[Term]
id: MT:0005184
name: circulating progesterone level
namespace: Trait.ontology
def: "aberration in the blood concentration of this antiestrogenic steroid" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
synonym: "abnormal circulating level of progesterone" EXACT []
is_a: MT:0005418 ! circulating hormone level

[Term]
id: MT:0005280
name: fatty acid level
namespace: Trait.ontology
def: "anomalous concentration of organic, monobasic acids derived from hydrocarbons and which are complexed with serum albumin for transport; they are saturated and unsaturated" [MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_pig
is_a: MT:0001547 ! lipid level
relationship: part_of MT:0005666 ! adipose tissue physiology

[Term]
id: MT:0005369
name: muscle trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005371
name: limbs/digits/tail trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005372
name: life span/aging trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_pig
synonym: "lifespan" EXACT []
synonym: "survival" EXACT []
synonym: "viability" EXACT []
synonym: "viable" EXACT []
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005375
name: adipose tissue trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "fat" EXACT []
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005376
name: homeostasis/metabolism trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005378
name: growth/size trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005379
name: endocrine/exocrine gland trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005386
name: behavior/neurological trait
namespace: Trait.ontology
alt_id: MT:0001350
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005387
name: immune system trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005388
name: respiratory system trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "lung" EXACT []
synonym: "pulmonary" EXACT []
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005389
name: reproductive system trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "reproduction" EXACT []
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005390
name: skeleton trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "bone" EXACT []
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005393
name: skin/coat/nails/feathers trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005395
name: other trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005397
name: hematopoietic system trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "hemopoietic system phenotype" EXACT []
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005410
name: fertilization
namespace: Trait.ontology
def: "anomaly in the process beginning with penetration of the secondary oocyte by the spermatozoon and completed by fusion of the male and female pronuclei" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
is_a: MT:0001919 ! reproductive system physiology

[Term]
id: MT:0005418
name: circulating hormone level
namespace: Trait.ontology
def: "anomalous blood concentration of any of the chemical substances that have specific regulatory effects on the activity of a certain organ or organs; originally applied to substances secreted by various endocrine glands and transported in the bloodstream to the target organs, it is sometimes extended to include substances that are not produced by the endocrine glands but that have similar effects" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000179 ! blood chemistry
is_a: MT:0003953 ! hormone level

[Term]
id: MT:0005428
name: clinical chemistry
namespace: Trait.ontology
def: "any anomaly in the laboratory tests that show the presence of physiologically significant substances in the blood, urine, tissue, and body fluids with application to the diagnosis or therapy of disease" [MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0001764 ! homeostasis

[Term]
id: MT:0005449
name: food intake
namespace: Trait.ontology
subset: slim_cattle
subset: slim_pig
synonym: "feed consumption" EXACT []
synonym: "food consumption" EXACT []
is_a: MT:0001431 ! eating behavior

[Term]
id: MT:0005452
name: body fat amount
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000003 ! adipose tissue morphology

[Term]
id: MT:0005456
name: weight gain
namespace: Trait.ontology
def: "number of excess calories needed to increase body weight by a specified amount" [MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_pig
is_a: MT:0001259 ! body weight

[Term]
id: MT:0005508
name: skeleton morphology
namespace: Trait.ontology
alt_id: MT:0000055
def: "malformation of the bony framework of the body in vertebrates" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal bone/ skeleton" EXACT []
synonym: "bone/ skeletal abnormalities" EXACT []
is_a: MT:0005390 ! skeleton trait

[Term]
id: MT:0005666
name: adipose tissue physiology
namespace: Trait.ontology
subset: slim_cattle
subset: slim_pig
is_a: MT:0005375 ! adipose tissue trait

[Term]
id: MT:0006078
name: nipple morphology
namespace: Trait.ontology
def: "malformation of the erectile protuberance at the tip of the mammary gland" [J:92627, smb:Susan M. Bello_Mouse Genome Informatics Curator, Taber's Cyclopedic Medical Dictionary_19th edition:ISBN N 0-8036-0655-99]
subset: slim_cattle
subset: slim_pig
synonym: "teat morphology" EXACT []
is_a: MT:0000627 ! mammary gland morphology

[Typedef]
id: is_a
name: is a
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig

[Typedef]
id: part_of
name: part_of
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_transitive: true