format-version: 1.2 date: 19:05:2009 10:52 auto-generated-by: OBO-Edit 2.0 subsetdef: slim_cattle "ATO Cattle Slim" subsetdef: slim_chkn "ATO Chicken Slim" subsetdef: slim_pig "ATO Pig Slim" default-namespace: ATO_namespace [Term] id: ATO:0000003 name: Immune function trait subset: slim_cattle subset: slim_chkn subset: slim_pig is_obsolete: true [Term] id: ATO:0000004 name: product quality def: "characteristics related to the ability of a product produced by or obtained from the body of an animal to meet certain standards" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: ID:0000701 ! product trait [Term] id: ATO:0000005 name: production trait subset: slim_cattle subset: slim_chkn subset: slim_pig is_obsolete: true [Term] id: ATO:0000006 name: Reproduction trait subset: slim_cattle subset: slim_pig is_obsolete: true [Term] id: ID:0000000 name: conformation def: "characteristics relating to an organism's overall structure and proportions" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig is_a: MT:0005395 ! other trait created_by: caripark creation_date: 2008-11-10T10:09:36Z [Term] id: ID:0000001 name: pigmentation subset: slim_cattle subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T10:09:36Z [Term] id: ID:0000004 name: age subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T10:09:36Z [Term] id: ID:0000005 name: disease resistance subset: slim_cattle subset: slim_chkn subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T10:12:53Z [Term] id: ID:0000007 name: parasite load def: "number of parasites harbored by an organism" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: ID:0000675 ! response to parasitic infection created_by: caripark creation_date: 2008-11-10T10:12:53Z [Term] id: ID:0000008 name: parasite resistance subset: slim_cattle subset: slim_chkn subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T10:12:53Z [Term] id: ID:0000014 name: carcass trait subset: slim_cattle subset: slim_chkn subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T10:20:24Z [Term] id: ID:0000016 name: meat product quality def: "characteristics related to the ability of meat products to meet certain standards" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: ATO:0000004 ! product quality created_by: caripark creation_date: 2008-11-10T10:20:24Z [Term] id: ID:0000017 name: feed intake def: "Amount of feed consumed" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "feed consumption" EXACT [] is_obsolete: true created_by: caripark creation_date: 2008-11-10T10:38:24Z [Term] id: ID:0000023 name: feed conversion def: "measure of an animal's ability to convert feed into additional body mass" [CP:Cari Park_Iowa State University curator] subset: slim_chkn subset: slim_pig synonym: "feed efficiency" RELATED [] relationship: part_of MT:0001731 ! postnatal growth rate relationship: part_of MT:0002121 ! metabolism created_by: caripark creation_date: 2008-11-10T10:38:24Z [Term] id: ID:0000024 name: endocrine subset: slim_cattle subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T10:44:31Z [Term] id: ID:0000025 name: fertility subset: slim_cattle subset: slim_chkn subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T10:44:31Z [Term] id: ID:0000027 name: reproductive organ subset: slim_cattle subset: slim_chkn subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T10:44:31Z [Term] id: ID:0000033 name: average daily gain def: "change in body weight over a period of time, divided by the number of days in the period" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig is_a: MT:0001731 ! postnatal growth rate is_a: MT:0005456 ! weight gain created_by: caripark creation_date: 2008-11-10T12:52:15Z [Term] id: ID:0000042 name: length of productive life def: "length of time during which a livestock animal can be utilized for breeding or production" [CP:Cari Park_Iowa State University curator] comment: In dairy cows, the length of time a female is producing milk, prior to the age of 84 months subset: slim_cattle subset: slim_pig synonym: "functional herd life" EXACT [] synonym: "longevity" RELATED [] is_a: MT:0005372 ! life span/aging trait created_by: caripark creation_date: 2008-11-10T02:40:05Z [Term] id: ID:0000047 name: circulating creatine kinase level def: "concentration in the blood of the enzyme creatine kinase, which uses ATP to convert creatine to phosphocreatine and ADP; elevated levels are indicative of muscle damage." [CP:Cari Park_Iowa State University curator] subset: slim_chkn subset: slim_pig synonym: "creatine kinase concentration" EXACT [] is_a: MT:0001570 ! circulating enzyme level created_by: caripark creation_date: 2008-11-10T01:14:43Z [Term] id: ID:0000070 name: white blood cell count subset: slim_cattle subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T01:27:53Z [Term] id: ID:0000095 name: anatomy subset: slim_cattle subset: slim_chkn subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T01:40:23Z [Term] id: ID:0000097 name: chemical subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T01:40:23Z [Term] id: ID:0000099 name: fat composition subset: slim_cattle subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T01:40:23Z [Term] id: ID:0000100 name: fat deposition subset: slim_cattle subset: slim_chkn subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T01:40:23Z [Term] id: ID:0000101 name: fatty acid content def: "Measure of the fatty acids present in a fat sample" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T01:40:23Z [Term] id: ID:0000102 name: meat flavor def: "characteristics related to the distinctive taste of meat" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig relationship: part_of ID:0000016 ! meat product quality created_by: caripark creation_date: 2008-11-10T01:40:23Z [Term] id: ID:0000104 name: meat color def: "characteristics related to the color of meat" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_chkn subset: slim_pig relationship: part_of ID:0000016 ! meat product quality created_by: caripark creation_date: 2008-11-10T01:40:23Z [Term] id: ID:0000105 name: muscling subset: slim_cattle subset: slim_chkn subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T01:40:23Z [Term] id: ID:0000106 name: meat odor def: "characteristics related to the distinctive smell of meat" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig relationship: part_of ID:0000016 ! meat product quality created_by: caripark creation_date: 2008-11-10T01:40:23Z [Term] id: ID:0000107 name: pH def: "Measurement of muscle pH following slaughter" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_chkn subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T01:40:23Z [Term] id: ID:0000108 name: stiffening subset: slim_cattle subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T01:40:23Z [Term] id: ID:0000109 name: meat texture subset: slim_cattle subset: slim_chkn subset: slim_pig relationship: part_of ID:0000016 ! meat product quality created_by: caripark creation_date: 2008-11-10T01:40:23Z [Term] id: ID:0000110 name: shear force def: "Assessment of meat tenderness based on a measurement of the amount of force (kg) required to shear multiple core samples from a cut of meat" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T01:40:23Z [Term] id: ID:0000111 name: bone weight def: "weight of one or more of the bones of the skeleton" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig relationship: part_of MT:0003795 ! bone structure created_by: caripark creation_date: 2008-11-10T01:44:59Z [Term] id: ID:0000114 name: carcass weight def: "weight of a carcass following slaughter and removal of the head, hide, intestinal tract, and internal organs" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0001259 ! body weight created_by: caripark creation_date: 2008-11-10T01:44:59Z [Term] id: ID:0000115 name: carcass yield subset: slim_cattle subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T01:44:59Z [Term] id: ID:0000116 name: dressing percentage def: "The percentage of the live animal that ends up as carcass (=hot carcass weight/body weight at slaughter)" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T01:44:59Z [Term] id: ID:0000117 name: hot carcass weight def: "hot or un-chilled weight of a carcass following slaughter and removal of the head, hide, intestinal tract, and internal organs" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig is_a: ID:0000114 ! carcass weight created_by: caripark creation_date: 2008-11-10T01:44:59Z [Term] id: ID:0000118 name: vertebra number def: "Number of bone segments constituting the spinal column" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T01:44:59Z [Term] id: ID:0000121 name: number of lumbar vertebrae def: "number of spinal column segments in the loin area, between the ribs and the pelvis" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig relationship: part_of MT:0000138 ! vertebrae number relationship: part_of MT:0003049 ! lumbar vertebrae morphology created_by: caripark creation_date: 2008-11-10T01:45:36Z [Term] id: ID:0000122 name: number of thoracic vertebrae def: "number of segments in the middle of the spinal column, which articulate with the ribs" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig relationship: part_of MT:0000138 ! vertebrae number relationship: part_of MT:0003047 ! thoracic vertebrae morphology created_by: caripark creation_date: 2008-11-10T01:45:36Z [Term] id: ID:0000124 name: backfat def: "Layer of subcutaneous fat over the back of a pig" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig synonym: "fatback" EXACT [] is_obsolete: true created_by: caripark creation_date: 2008-11-10T01:50:29Z [Term] id: ID:0000126 name: fat thickness def: "the thickness of a layer of adipose tissue" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig synonym: "fat depth" EXACT [] is_a: MT:0005452 ! body fat amount created_by: caripark creation_date: 2008-11-10T01:50:29Z [Term] id: ID:0000128 name: fat weight subset: slim_cattle subset: slim_chkn subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T01:50:29Z [Term] id: ID:0000131 name: marbling def: "visible intramuscular fat" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig relationship: part_of ID:0000016 ! meat product quality relationship: part_of MT:0000013 ! fat distribution created_by: caripark creation_date: 2008-11-10T01:50:29Z [Term] id: ID:0000134 name: subcutaneous fat def: "layer of fat lying directly beneath the skin" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig relationship: part_of MT:0000013 ! fat distribution created_by: caripark creation_date: 2008-11-10T01:50:29Z [Term] id: ID:0000135 name: subcutaneous fat thickness def: "thickness of the fat layer directly beneath the skin" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig is_a: ID:0000126 ! fat thickness relationship: part_of ID:0000134 ! subcutaneous fat created_by: caripark creation_date: 2008-11-10T01:50:57Z [Term] id: ID:0000142 name: shoulder subcutaneous fat thickness def: "Thickness of the subcutaneous fat on the upper portion of the front leg" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig synonym: "fat depth at shoulder" EXACT [] is_obsolete: true created_by: caripark creation_date: 2008-11-10T01:56:01Z [Term] id: ID:0000146 name: longissimus dorsi weight def: "weight of the longissimus dorsi" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig synonym: "loin weight" EXACT [] synonym: "longissimus muscle weight" EXACT [] is_a: ID:0000706 ! longissimus dorsi morphology is_a: ID:0000712 ! skeletal muscle weight created_by: caripark creation_date: 2008-11-10T01:59:03Z [Term] id: ID:0000150 name: Warner-Bratzler shear force def: "Measurement of shear force with precisely defined equipment and sample specifications, including cutting blade thickness, shape, and bevel, and diameter of sample cores" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-12-09T01:53:27Z [Term] id: ID:0000172 name: follicle stimulating hormone subset: slim_cattle subset: slim_chkn subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T02:50:56Z [Term] id: ID:0000174 name: luteinizing hormone subset: slim_cattle subset: slim_chkn subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T02:50:56Z [Term] id: ID:0000181 name: offspring born alive def: "number of offspring, not including stillborn" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig synonym: "prenatal survival" EXACT [] synonym: "total number born alive" EXACT [] relationship: part_of MT:0002161 ! fertility/fecundity created_by: caripark creation_date: 2008-11-10T02:59:38Z [Term] id: ID:0000182 name: offspring born alive, % def: "Percentage of offspring born alive (not stillborn)" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T02:59:38Z [Term] id: ID:0000189 name: offspring born def: "total number born, including stillborn animals" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig synonym: "total number born" EXACT [] relationship: part_of MT:0002161 ! fertility/fecundity created_by: caripark creation_date: 2008-12-10T10:22:09Z [Term] id: ID:0000193 name: ovulation rate def: "frequency of ovulation, as determined by the number of corpora lutea in the ovary" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig relationship: part_of MT:0001928 ! ovulation created_by: caripark creation_date: 2008-11-10T02:59:38Z [Term] id: ID:0000197 name: stillbirth def: "offspring that are either born dead or die within 24 hours of birth" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig relationship: part_of MT:0002161 ! fertility/fecundity created_by: caripark creation_date: 2008-11-10T02:59:38Z [Term] id: ID:0000203 name: female measurements subset: slim_cattle subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T03:01:22Z [Term] id: ID:0000204 name: male measurements subset: slim_cattle subset: slim_chkn subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T03:01:22Z [Term] id: ID:0000206 name: teat number def: "total number of teats/nipples on a female" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig synonym: "nipple number" EXACT [] is_a: MT:0006078 ! nipple morphology created_by: caripark creation_date: 2008-11-10T03:02:18Z [Term] id: ID:0000216 name: birth assistance def: "necessity of assistance during delivery of offspring" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig relationship: part_of MT:0002907 ! parturition created_by: caripark creation_date: 2008-11-10T03:04:56Z [Term] id: ID:0000217 name: age at first breeding subset: slim_cattle subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T03:04:56Z [Term] id: ID:0000218 name: age at puberty subset: slim_cattle subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T03:04:56Z [Term] id: ID:0000220 name: abdominal fat weight def: "weight of the fat lining the abdominal cavity and surrounding the kidneys" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "leaf fat weight" EXACT [] is_a: MT:0001781 ! white fat amount created_by: caripark creation_date: 2008-11-10T03:41:26Z [Term] id: ID:0000227 name: heart weight def: "Weight of the organ that pumps blood throughout the body" [CP:Cari Park_Iowa State University curator] subset: slim_chkn subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T03:45:54Z [Term] id: ID:0000228 name: intestine length def: "Length of the digestive tract" [CP:Cari Park_Iowa State University curator] subset: slim_chkn subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T03:45:54Z [Term] id: ID:0000229 name: liver weight def: "Weight of the liver removed from a carcass" [CP:Cari Park_Iowa State University curator] subset: slim_chkn subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-10T03:45:54Z [Term] id: ID:0000300 name: average daily gain (10-22 weeks) def: "Average daily change in body weight from 10 to 22 weeks of age" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:42:29Z [Term] id: ID:0000301 name: average daily gain (18-26 weeks) def: "Average daily change in body weight from 18 to 26 weeks of age" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:42:29Z [Term] id: ID:0000302 name: average daily gain (3-5 weeks) def: "Average daily change in body weight from 3 to 5 weeks of age" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:42:29Z [Term] id: ID:0000303 name: average daily gain (3-10 weeks) def: "Average daily change in body weight from 3 to 10 weeks of age" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:42:29Z [Term] id: ID:0000304 name: average daily gain (4-13 weeks) def: "Average daily change in body weight from 4 to 13 weeks of age" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:42:29Z [Term] id: ID:0000305 name: average daily gain (5-7 weeks) def: "Average daily change in body weight from 5 to 7 weeks of age" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:42:29Z [Term] id: ID:0000306 name: average daily gain (60-160 days) def: "Average daily change in body weight from 60 to 160 days of age" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:42:29Z [Term] id: ID:0000307 name: average daily gain (7-9 weeks) def: "Average daily change in body weight from 7 to 9 weeks of age" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:42:29Z [Term] id: ID:0000308 name: average daily gain (8-18 weeks) def: "Average daily change in body weight from 8 to 18 weeks of age" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:42:29Z [Term] id: ID:0000309 name: average daily gain (birth to 3 weeks) def: "Average daily change in body weight from birth to 3 weeks of age" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:42:29Z [Term] id: ID:0000310 name: average daily gain (birth to 60 days) def: "Average daily change in body weight from birth to 60 days of age" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:42:29Z [Term] id: ID:0000311 name: average daily gain (25-90 kg) def: "Average daily change in body weight between the weights of 25 and 90 kg" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:42:29Z [Term] id: ID:0000312 name: average daily gain (35-55 kg) def: "Average daily change in body weight between the weights of 35 and 55 kg" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:42:29Z [Term] id: ID:0000313 name: average daily gain (55-80 kg) def: "Average daily change in body weight between the weights of 55 and 80 kg" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:42:29Z [Term] id: ID:0000314 name: average daily gain (birth to 30 kg) def: "Average daily change in body weight from birth to 30 kg" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:42:29Z [Term] id: ID:0000315 name: average daily gain (birth to 70 kg) def: "Average daily change in body weight from birth to 70 kg" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:42:29Z [Term] id: ID:0000316 name: average daily gain (birth to end of test) def: "Average daily change in body weight from birth to the end of a test period" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:42:29Z [Term] id: ID:0000317 name: average daily gain (entire life) def: "Average daily change in body weight from birth to slaughter" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:42:29Z [Term] id: ID:0000318 name: average daily gain on test def: "Average daily change in body weight during a test period" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:42:29Z [Term] id: ID:0000319 name: average daily gain on weaning def: "Average daily change in body weight from birth to weaning" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig synonym: "pre-weaning average daily gain" EXACT [] is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:42:29Z [Term] id: ID:0000320 name: average daily gain (weaning to 25 kg) def: "Average daily change in body weight from weaning to 25 kg" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:42:29Z [Term] id: ID:0000321 name: average daily gain (weaning to 55 kg) def: "Average daily change in body weight from weaning to 55 kg" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:42:29Z [Term] id: ID:0000322 name: age at slaughter def: "age of an animal at the time of slaughter" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of MT:0001661 ! life span created_by: caripark creation_date: 2008-11-11T12:43:08Z [Term] id: ID:0000323 name: body weight (10 weeks) def: "Body weight at 10 weeks of age" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:48:27Z [Term] id: ID:0000324 name: body weight (13 weeks) def: "Body weight at 13 weeks of age" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:48:27Z [Term] id: ID:0000325 name: body weight (16 days) def: "Body weight at 16 days of age" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:48:27Z [Term] id: ID:0000326 name: body weight (17 weeks) def: "Body weight at 17 weeks of age" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:48:27Z [Term] id: ID:0000328 name: body weight (22 weeks) def: "Body weight at 22 weeks of age" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:48:27Z [Term] id: ID:0000329 name: body weight (25 weeks) def: "Body weight at 25 weeks of age" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:48:27Z [Term] id: ID:0000330 name: body weight (26 weeks) def: "Body weight at 26 weeks of age" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:48:27Z [Term] id: ID:0000331 name: body weight (3 weeks) def: "Body weight at 3 weeks of age" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:48:27Z [Term] id: ID:0000332 name: body weight (30 days) def: "Body weight at 30 days of age" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:48:27Z [Term] id: ID:0000333 name: body weight (35 days) def: "Body weight at 35 days of age" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:48:27Z [Term] id: ID:0000334 name: body weight (4 weeks) def: "Body weight at 4 weeks of age" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:48:27Z [Term] id: ID:0000335 name: body weight (60 days) def: "Body weight at 60 days of age" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:48:27Z [Term] id: ID:0000336 name: body weight (8 weeks) def: "Body weight at 8 weeks of age" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:48:27Z [Term] id: ID:0000337 name: body weight (birth) def: "Body weight at birth" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig synonym: "birth weight" EXACT [] is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:48:27Z [Term] id: ID:0000338 name: body weight (slaughter) def: "Body weight at slaughter" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:48:27Z [Term] id: ID:0000339 name: body weight (weaning) def: "Body weight at weaning" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig synonym: "weaning weight" EXACT [] is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:48:27Z [Term] id: ID:0000340 name: longevity subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:52:40Z [Term] id: ID:0000341 name: basal circulating adrenocorticotropin level def: "level of pituitary adrenocorticotropic hormone in the blood in the absence of an external intervention" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: MT:0002664 ! circulating adrenocorticotropin level created_by: caripark creation_date: 2008-11-11T12:58:57Z [Term] id: ID:0000342 name: post-stress ACTH level def: "Level of pituitary adrenocorticotropic hormone in the blood at the end of a stress test" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:58:57Z [Term] id: ID:0000343 name: basal circulating cortisol level def: "level of cortisol in the blood in the absence of external intervention" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "basal circulating hydrocortisone level" EXACT [] is_a: ID:0000670 ! circulating cortisol level created_by: caripark creation_date: 2008-11-11T12:58:57Z [Term] id: ID:0000344 name: basal circulating glucose level def: "level of glucose in the blood in the absence of external intervention" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: MT:0000188 ! circulating glucose level created_by: caripark creation_date: 2008-11-11T12:58:57Z [Term] id: ID:0000345 name: exploration def: "Time spent rooting or sniffing the sides or floor of the arena during a stress test" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:58:57Z [Term] id: ID:0000346 name: locomotion def: "The extent of movement during a stress test, measured by the number of sections (marked on the floor) the animal enters in an unfamiliar area" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:58:57Z [Term] id: ID:0000347 name: induced circulating glucose level def: "level of glucose in the blood in response to an external intervention" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: MT:0000188 ! circulating glucose level created_by: caripark creation_date: 2008-11-11T12:58:57Z [Term] id: ID:0000348 name: glucose level variations def: "Difference between post-stress and basal levels of glucose in the blood" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T12:58:57Z [Term] id: ID:0000349 name: neuroendocrine response def: "alterations in the levels of adrenocorticotropic hormone, glucose, and cortisol in response to stress" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of MT:0002164 ! gland physiology created_by: caripark creation_date: 2008-11-11T12:58:57Z [Term] id: ID:0000350 name: induced circulating cortisol level def: "level of cortisol in the blood in response to external intervention" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "induced circulating hydrocortisone level" EXACT [] is_a: ID:0000670 ! circulating cortisol level created_by: caripark creation_date: 2008-11-11T12:58:57Z [Term] id: ID:0000351 name: black vs. white coat color subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:01:13Z [Term] id: ID:0000355 name: scrotal hernia def: "an inguinal hernia that has passed into the scrotum" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of MT:0002669 ! scrotum morphology created_by: caripark creation_date: 2008-11-11T01:10:14Z [Term] id: ID:0000357 name: joint abnormalities subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:10:14Z [Term] id: ID:0000358 name: joint lesions subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:10:14Z [Term] id: ID:0000359 name: osteochondrosis def: "a class of joint diseases characterized by interruption of a bone's blood supply and bone necrosis, followed by bone regrowth" [CP:Cari Park_Iowa State University curator, MeSH:C05.116.821] subset: slim_pig relationship: part_of MT:0003795 ! bone structure created_by: caripark creation_date: 2008-11-11T01:10:14Z [Term] id: ID:0000361 name: circumference of cannon bone def: "circumference of the metacarpal or metatarsal bone, between the knee or hock and the fetlock" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of MT:0000550 ! forelimb morphology relationship: part_of MT:0000556 ! hindlimb morphology relationship: part_of MT:0003072 ! metatarsal bone morphology relationship: part_of MT:0003073 ! metacarpal bone morphology created_by: caripark creation_date: 2008-11-11T01:13:23Z [Term] id: ID:0000362 name: length of claws (front inside) subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:13:23Z [Term] id: ID:0000363 name: length of claws (front outside) subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:13:23Z [Term] id: ID:0000364 name: length of claws (hind inside) subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:13:23Z [Term] id: ID:0000365 name: length of claws (hind outside) subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:13:23Z [Term] id: ID:0000366 name: feet and legs score subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:13:23Z [Term] id: ID:0000367 name: feet score (front) subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:13:23Z [Term] id: ID:0000368 name: feet score (hind) subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:13:23Z [Term] id: ID:0000369 name: femur dimensions def: "measurements relating to the size of the long bone of the thigh" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: MT:0000559 ! femur morphology created_by: caripark creation_date: 2008-11-11T01:13:23Z [Term] id: ID:0000370 name: hair (amount) subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:13:23Z [Term] id: ID:0000372 name: leg length subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:13:23Z [Term] id: ID:0000373 name: leg pastern (front) subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:13:23Z [Term] id: ID:0000374 name: leg pastern (hind) subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:13:23Z [Term] id: ID:0000375 name: leg score (front) subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:13:23Z [Term] id: ID:0000376 name: leg score (hind) subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:13:23Z [Term] id: ID:0000377 name: leg set view subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:13:23Z [Term] id: ID:0000378 name: leg torsion (front) subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:13:23Z [Term] id: ID:0000379 name: leg torsion (hind) subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:13:23Z [Term] id: ID:0000380 name: leg angularity (front) subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:13:23Z [Term] id: ID:0000381 name: leg angularity (hind) subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:13:23Z [Term] id: ID:0000382 name: lob ear subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:13:23Z [Term] id: ID:0000383 name: nose score subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:13:23Z [Term] id: ID:0000384 name: vertebrae distance def: "distance from first thoracic to last lumbar vertebra" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of MT:0000137 ! vertebrae morphology created_by: caripark creation_date: 2008-11-11T01:14:37Z [Term] id: ID:0000385 name: total vertebrae number def: "total number of bone segments constituting the spinal column" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig relationship: part_of MT:0000138 ! vertebrae number created_by: caripark creation_date: 2008-11-11T01:16:14Z [Term] id: ID:0000386 name: induced circulating IgG level def: "level of serum immunoglobulin G in response to an external intervention" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: MT:0001805 ! circulating IgG level created_by: caripark creation_date: 2008-11-11T01:40:12Z [Term] id: ID:0000387 name: anti-O149 E. coli IgG level response def: "Change in serum levels of E. coli O149 IgG following immunization with E. coli antigens" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:40:12Z [Term] id: ID:0000388 name: anti-O149 E. coli IgG levels def: "Level of serum IgG to E. coli O149 antigen" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:40:12Z [Term] id: ID:0000389 name: susceptibility to E. coli K88 infection def: "Likelihood that an organism will develop ill effects from infection with Escherichia coli expressing K88 antigen" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "resistance to E. coli K88 infection" EXACT [] is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:40:12Z [Term] id: ID:0000390 name: susceptibility to pseudorabies viral infection def: "Likelihood that an organism will develop ill effects from infection with pseudorabies virus (suid herpesvirus-1, porcine herpesvirus 1)" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "resistance to pseudorabies viral infection" EXACT [] is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:40:12Z [Term] id: ID:0000391 name: susceptibility to E. coli F18 infection def: "Susceptibility to infection by F18-positive E. coli due to the expression of ECF18R alleles in the small intestine" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "small intestinal E. coli F18 receptor" EXACT [] is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:40:12Z [Term] id: ID:0000392 name: conA-induced lymphocyte proliferation def: "proliferation of lymphocytes upon stimulation with concanavalin A, a lectin isolated from the jack bean, Canavalia ensiformis" [CP:Cari Park_Iowa State University curator, MeSH:D12.776.503.499.500 "National Library of Medicine - Medical Subject Headings"] subset: slim_pig is_a: ID:0000393 ! mitogen-induced lymphocyte proliferation created_by: caripark creation_date: 2008-11-11T01:50:35Z [Term] id: ID:0000393 name: mitogen-induced lymphocyte proliferation def: "proliferation of lymphocytes upon stimulation with a protein that induces cell division" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: ID:0000661 ! lymphocyte proliferation created_by: caripark creation_date: 2008-11-11T01:50:35Z [Term] id: ID:0000394 name: pokeweed mitogen (PWM)-induced lymphocyte proliferation def: "proliferation of lymphocytes upon stimulation with pokeweed mitogen, a lectin isolated from the roots of Phytolacca americana" [CP:Cari Park_Iowa State University curator, MeSH:D12.776.503.499.875 "National Library of Medicine - Medical Subject Headings"] subset: slim_pig is_a: ID:0000393 ! mitogen-induced lymphocyte proliferation created_by: caripark creation_date: 2008-11-11T01:50:35Z [Term] id: ID:0000395 name: post-stress mitogen-induced IL-2 activity subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:50:35Z [Term] id: ID:0000396 name: pre-/post-vaccination levels of IgG to K88 antigen subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:50:35Z [Term] id: ID:0000397 name: specific IgG response to E. coli O149 antigen subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:50:35Z [Term] id: ID:0000398 name: spontaneous lymphocyte proliferation def: "unstimulated proliferation of lymphocytes" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: ID:0000661 ! lymphocyte proliferation created_by: caripark creation_date: 2008-11-11T01:50:35Z [Term] id: ID:0000399 name: stress-induced leukocyte proliferation subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:50:35Z [Term] id: ID:0000400 name: stress-induced neutrophil number alteration subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:50:35Z [Term] id: ID:0000401 name: muscle androstenone level def: "amount of the testicular steroid androstenone detected in muscle via ELISA or HPLC" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: MT:0002106 ! muscle physiology created_by: caripark creation_date: 2008-11-11T02:26:46Z [Term] id: ID:0000402 name: fecal bacteria count def: "bacterial count (cfu) in feces" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: ID:0000665 ! bacteria count created_by: caripark creation_date: 2008-11-11T01:54:41Z [Term] id: ID:0000403 name: salmonella count in feces (day 7 post-infection) subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T01:54:41Z [Term] id: ID:0000404 name: bacteria count in liver def: "bacterial count (cfu) in liver" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: ID:0000665 ! bacteria count created_by: caripark creation_date: 2008-11-11T01:54:41Z [Term] id: ID:0000405 name: bacteria count in spleen def: "bacterial count (cfu) in spleen" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: ID:0000665 ! bacteria count created_by: caripark creation_date: 2008-11-11T01:54:41Z [Term] id: ID:0000406 name: cold carcass weight def: "weight of a carcass that has been chilled overnight following slaughter and removal of the head, hide, intestinal tract, and internal organs" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: ID:0000114 ! carcass weight created_by: caripark creation_date: 2008-11-11T01:57:31Z [Term] id: ID:0000407 name: belly percentage def: "Weight of the cut of meat from the underside of the pig divided by the weight of the carcass" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:01:04Z [Term] id: ID:0000408 name: belly weight def: "weight of the cut of meat obtained from the underside of the pig" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: ID:0000714 ! product weight created_by: caripark creation_date: 2008-11-11T02:01:04Z [Term] id: ID:0000410 name: bone percent subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:01:04Z [Term] id: ID:0000411 name: carcass length def: "length of the carcass following removal of the head; typically measured between the first or second cervical vertebra or the first rib and the pelvis" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: MT:0001256 ! body length created_by: caripark creation_date: 2008-11-11T02:01:04Z [Term] id: ID:0000412 name: carcass thickness subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:01:04Z [Term] id: ID:0000413 name: glycogen content def: "Concentration in muscle of the glucose polysaccharide used for short-term energy storage" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:26:46Z [Term] id: ID:0000414 name: diaphragm weight def: "weight of the muscle that separates the thoracic and abdominal cavities" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of MT:0002279 ! diaphragm morphology created_by: caripark creation_date: 2008-11-11T02:01:04Z [Term] id: ID:0000415 name: glycolytic potential def: "measure of the available glycogen stores in tissue = 2 x ([glycogen]+[glucose]+[glucose-6-phosphate])+[lactate]" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of ID:0000694 ! muscle glycogen homeostasis relationship: part_of MT:0005438 ! glycogen homeostasis created_by: caripark creation_date: 2008-11-11T02:26:46Z [Term] id: ID:0000416 name: estimated carcass lean content subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:01:04Z [Term] id: ID:0000418 name: fat-cut percentage subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:01:04Z [Term] id: ID:0000419 name: total foot weight def: "weight of the front feet separated from the carcass at the level of the carpal bones, and the hind feet removed at the tibio-tarsal joint" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: ID:0000686 ! paw/hand/foot/hoof weight created_by: caripark creation_date: 2008-11-11T02:01:04Z [Term] id: ID:0000420 name: head weight def: "weight of the head, separated from the carcass at the second cervical vertebra" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of MT:0000002 ! head size created_by: caripark creation_date: 2008-11-11T02:01:04Z [Term] id: ID:0000421 name: small intestine length def: "length of the upper portion of the digestive tract, between the stomach and the large intestine" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: MT:0000496 ! small intestine morphology created_by: caripark creation_date: 2008-11-11T02:01:04Z [Term] id: ID:0000422 name: shoulder weight def: "weight of the untrimmed cut of meat from the upper portion of the front leg of the pig" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: ID:0000714 ! product weight relationship: part_of ID:0000687 ! forelimb weight created_by: caripark creation_date: 2008-11-11T02:01:04Z [Term] id: ID:0000423 name: skin percentage subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:01:04Z [Term] id: ID:0000424 name: skin thickness def: "Thickness of skin on the back, at the midpoint of body length" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:01:04Z [Term] id: ID:0000425 name: skin weight def: "weight of the membranous protective covering of the body; may include closely associated fat" [CP:Cari Park_Iowa State University curator] subset: slim_chkn subset: slim_pig relationship: part_of MT:0002060 ! skin morphology created_by: caripark creation_date: 2008-11-11T02:01:04Z [Term] id: ID:0000426 name: weight of trimmed wholesale product def: "weight of four major wholesale cuts of the pig (ham, loin, Boston butt, and picnic shoulder), trimmed of fat" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: ID:0000714 ! product weight created_by: caripark creation_date: 2008-11-11T02:01:04Z [Term] id: ID:0000427 name: trimmed wholesale product/live weight def: "Weight of four major wholesale cuts of the pig (ham, loin, Boston butt, and picnic shoulder) trimmed of fat and adjusted to a constant live weight" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:01:04Z [Term] id: ID:0000429 name: muscle lactate level def: "concentration in muscle of the compound produced from pyruvate by lactate dehydrogenase" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: MT:0002106 ! muscle physiology created_by: caripark creation_date: 2008-11-11T02:26:46Z [Term] id: ID:0000430 name: muscle cholesterol level def: "amount of cholesterol present in the total lipid extracted from a muscle" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: MT:0003947 ! cholesterol level relationship: part_of ID:0000479 ! muscle lipid level created_by: caripark creation_date: 2008-11-11T02:26:46Z [Term] id: ID:0000431 name: muscle indole level def: "amount of a tryptophan degradation product detected in muscle via HPLC" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: MT:0002106 ! muscle physiology created_by: caripark creation_date: 2008-11-11T02:26:46Z [Term] id: ID:0000432 name: muscle water content def: "amount of moisture in a muscle sample, determined by the difference in weight before and after oven drying" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: MT:0000676 ! water content is_a: MT:0002106 ! muscle physiology created_by: caripark creation_date: 2008-11-11T02:26:46Z [Term] id: ID:0000433 name: muscle protein level def: "total protein content of muscle" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: MT:0002106 ! muscle physiology created_by: caripark creation_date: 2008-11-11T02:26:46Z [Term] id: ID:0000434 name: muscle skatole level def: "amount of a tryptophan degradation product detected in muscle via HPLC or colorimetric assay" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "3-methyl indole concentration" EXACT [] is_a: MT:0002106 ! muscle physiology created_by: caripark creation_date: 2008-11-11T02:26:46Z [Term] id: ID:0000435 name: muscle conductivity def: "ability of muscle to conduct electrical current" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: MT:0002106 ! muscle physiology created_by: caripark creation_date: 2008-11-11T02:27:18Z [Term] id: ID:0000436 name: skeletal muscle conductivity def: "ability of skeletal muscle to conduct electrical current" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: ID:0000435 ! muscle conductivity created_by: caripark creation_date: 2008-11-11T02:29:54Z [Term] id: ID:0000437 name: conductivity (45 min post-mortem) def: "Electrical conductivity of muscle 45 minutes post-mortem" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:29:54Z [Term] id: ID:0000440 name: fatty acid carbon chain length def: "average number of carbon atoms in the fatty acids in a sample, determined by gas chromatography" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of MT:0005666 ! adipose tissue physiology created_by: caripark creation_date: 2008-11-11T02:37:42Z [Term] id: ID:0000441 name: double-bond index def: "Sum of the percentage of fatty acids in a fat sample with any number of double bonds, multiplied by the number of double bonds, with the total divided by 100" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:37:42Z [Term] id: ID:0000444 name: fat androstenone level def: "amount of the testicular steroid androstenone detected in fat samples via ELISA" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of MT:0005666 ! adipose tissue physiology created_by: caripark creation_date: 2008-11-11T02:37:42Z [Term] id: ID:0000452 name: peroxidability index def: "Calculated from fatty acid percentage of a fat sample: [(% monoenoic x 0.025) + (% dienoic) + (% trienoic x 2) + (% tetraenoic x 4) + (% pentaenoic x 6) + (% hexaenoic x8)]" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:37:42Z [Term] id: ID:0000454 name: unsaturated index def: "Equal to double bond index/percentage of saturated fatty acids in a fat sample" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:37:42Z [Term] id: ID:0000455 name: fat androstenone level (100 days of age) def: "Amount of the testicular steroid androstenone detected in backfat biopsies via ELISA (100 days of age)" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:38:46Z [Term] id: ID:0000456 name: fat androstenone level (120 days of age) def: "Amount of the testicular steroid androstenone detected in backfat biopsies via ELISA (120 days of age)" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:38:46Z [Term] id: ID:0000457 name: fat androstenone level (140 days of age) def: "Amount of the testicular steroid androstenone detected in backfat biopsies via ELISA (140 days of age)" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:38:46Z [Term] id: ID:0000458 name: fat androstenone level (160 days of age) def: "Amount of the testicular steroid androstenone detected in backfat biopsies via ELISA (160 days of age)" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:38:46Z [Term] id: ID:0000459 name: abdominal fat subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:41:11Z [Term] id: ID:0000460 name: fat area def: "Area of fat on M. Lattisimus Dorsi between the 13th and 14th ribs" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: MT:0000003 ! adipose tissue morphology created_by: caripark creation_date: 2008-11-11T02:47:13Z [Term] id: ID:0000461 name: fat cuts subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:47:13Z [Term] id: ID:0000462 name: fat percentage in carcass subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:47:13Z [Term] id: ID:0000463 name: fat ratio (percentage) subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:47:13Z [Term] id: ID:0000464 name: fat-to-meat ratio subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:47:13Z [Term] id: ID:0000465 name: intermuscular fat weight def: "weight of fat present between the muscles" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "seam fat weight" EXACT [] is_a: MT:0001781 ! white fat amount created_by: caripark creation_date: 2008-11-11T02:47:13Z [Term] id: ID:0000466 name: internal fat ratio subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:47:13Z [Term] id: ID:0000467 name: intestinal fat percent subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:47:13Z [Term] id: ID:0000468 name: intestinal fat weight def: "weight of the fat associated with the small intestine" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "caul fat" EXACT [] is_a: MT:0001781 ! white fat amount created_by: caripark creation_date: 2008-11-11T02:47:13Z [Term] id: ID:0000469 name: backfat depth def: "Depth of subcutaneous fat (including skin) at a point on the animal's back" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:58:47Z [Term] id: ID:0000470 name: leaf fat percentage def: "Weight of the fat lining the abdominal cavity and surrounding the kidneys, expressed as a percentage of total carcass weight" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:47:13Z [Term] id: ID:0000471 name: leaf fat weight def: "Weight of the fat lining the abdominal cavity and surrounding the kidneys" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:47:13Z [Term] id: ID:0000472 name: subcutaneous fat weight def: "weight of the fat layer directly under the skin" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: MT:0001781 ! white fat amount relationship: part_of ID:0000134 ! subcutaneous fat created_by: caripark creation_date: 2008-11-11T02:48:24Z [Term] id: ID:0000473 name: backfat + leaf fat percentage def: "Sum of subcutaneous backfat and internal fat, expressed as a percentage of total carcass weight" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:47:13Z [Term] id: ID:0000474 name: residual fatty acids subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:47:13Z [Term] id: ID:0000475 name: shoulder external fat weight def: "Weight of the fat trimmed from the cut of meat from the upper portion of the front leg" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:47:13Z [Term] id: ID:0000476 name: shoulder fat depth def: "Depth of the subcutaneous fat on the upper portion of the front leg" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:47:13Z [Term] id: ID:0000477 name: side fat subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:47:13Z [Term] id: ID:0000478 name: total fatty acid level subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:47:13Z [Term] id: ID:0000479 name: muscle lipid level def: "total lipid content of a muscle" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "total lipid" EXACT [] is_a: MT:0002106 ! muscle physiology relationship: part_of ID:0000016 ! meat product quality created_by: caripark creation_date: 2008-11-11T02:47:13Z [Term] id: ID:0000480 name: intramuscular fat weight def: "weight of the fat present within skeletal muscle, determined through either petroleum-ether or detergent extraction or near-infrared transmission analysis" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig is_a: MT:0001781 ! white fat amount relationship: part_of ID:0000016 ! meat product quality created_by: caripark creation_date: 2008-11-11T02:54:44Z [Term] id: ID:0000481 name: intramuscular fat percentage def: "Mass of fat present within skeletal muscle, determined through either petroleum-ether or detergent extraction or near-infrared transmission analysis, expressed as a percentage of muscle weight" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:54:44Z [Term] id: ID:0000482 name: backfat percentage def: "Weight of subcutaneous fat along the back of the pig, expressed as a percentage of total carcass weight" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:58:47Z [Term] id: ID:0000483 name: backfat weight def: "Weight of subcutaneous fat along the back of the pig" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:58:47Z [Term] id: ID:0000484 name: backfat (40 kg live weight) subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:14:09Z [Term] id: ID:0000485 name: backfat (60 kg live weight) subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:14:09Z [Term] id: ID:0000486 name: average backfat thickness subset: slim_pig synonym: "loin fat depth" EXACT [] is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:14:09Z [Term] id: ID:0000487 name: backfat above muscle dorsi subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:14:09Z [Term] id: ID:0000488 name: backfat at first lumbar subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:14:09Z [Term] id: ID:0000489 name: backfat at first rib def: "Subcutaneous fat thickness on the back at the position of the first rib" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:14:09Z [Term] id: ID:0000490 name: backfat at last lumbar def: "Subcutaneous fat thickness on the back at the position of the last lumbar vertebra" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:14:09Z [Term] id: ID:0000491 name: backfat at last rib def: "Subcutaneous fat thickness on the back at the position of the last rib" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:14:09Z [Term] id: ID:0000492 name: backfat at neck subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:14:09Z [Term] id: ID:0000493 name: backfat at P2 position subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:14:09Z [Term] id: ID:0000494 name: backfat at rump subset: slim_pig synonym: "rear backfat" EXACT [] is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:14:09Z [Term] id: ID:0000495 name: backfat at shoulder subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:14:09Z [Term] id: ID:0000496 name: backfat at tenth rib def: "Subcutaneous fat thickness on the back at the position of the tenth rib" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "loin fat depth" RELATED [] is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:14:09Z [Term] id: ID:0000497 name: backfat between 3rd and 4th rib subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:14:09Z [Term] id: ID:0000498 name: backfat between 6th and 7th rib subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:14:09Z [Term] id: ID:0000499 name: backfat between 3rd and 4th lumbar subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:14:09Z [Term] id: ID:0000500 name: backfat at max. mus. depth subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:14:09Z [Term] id: ID:0000501 name: backfat on longissimus dorsi at 12th/14th rib subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:14:09Z [Term] id: ID:0000502 name: backfat on longissimus dorsi at 13th/14th rib subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:14:09Z [Term] id: ID:0000504 name: backfat side def: "Subcutaneous fat thickness on the animal's side at the interface of the 13th and 14th ribs" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:14:09Z [Term] id: ID:0000505 name: backfat 3 vertebrae beneath last rib subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:14:09Z [Term] id: ID:0000506 name: backfat at first rib (14 weeks of age) subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:18:14Z [Term] id: ID:0000507 name: backfat at mid-back def: "Subcutaneous fat thickness on the back at the mid-point of the body" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:14:09Z [Term] id: ID:0000508 name: FOM backfat depth def: "Loin fat depth measured by Fat-O-Meater" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "Average backfat" RELATED [] synonym: "Loin fat depth" RELATED [] is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:14:09Z [Term] id: ID:0000510 name: backfat at last rib (14 weeks of age) subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:15:39Z [Term] id: ID:0000511 name: backfat at last rib (26 weeks of age) subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:15:39Z [Term] id: ID:0000512 name: backfat at first rib (26 weeks of age) subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:18:14Z [Term] id: ID:0000513 name: backfat at last lumbar (14 weeks of age) subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:19:01Z [Term] id: ID:0000514 name: backfat at last lumbar (26 weeks of age) subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:19:01Z [Term] id: ID:0000515 name: backfat at tenth rib (13 weeks of age) subset: slim_pig synonym: "loin fat depth" RELATED [] is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:20:15Z [Term] id: ID:0000516 name: backfat at tenth rib (17 weeks of age) subset: slim_pig synonym: "loin fat depth" RELATED [] is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:20:15Z [Term] id: ID:0000517 name: backfat at tenth rib (22 weeks of age) subset: slim_pig synonym: "loin fat depth" RELATED [] is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:20:15Z [Term] id: ID:0000518 name: 7-octadecenoic acid level def: "amount of a monounsaturated fatty acid (C18H34O2), with a carbon-carbon double bond in the n-7 position, present in a sample of fat" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "7-octadecenoic acid percentage" EXACT [] is_a: MT:0005285 ! unsaturated fatty acid level created_by: caripark creation_date: 2008-11-11T03:26:41Z [Term] id: ID:0000519 name: eicosadienoic acid level def: "amount of an unsaturated fatty acid (C20H36O2), with two carbon-carbon double bonds, present in a sample of fat" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "eicosadienoic acid percentage" EXACT [] is_a: MT:0005285 ! unsaturated fatty acid level created_by: caripark creation_date: 2008-11-11T03:26:41Z [Term] id: ID:0000520 name: eicosenoic acid level def: "amount of a monounsaturated fatty acid (C20H38O2), with a carbon-carbon double bond in the n-9 position, present in a sample of fat" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "eicosenoic acid percentage" EXACT [] is_a: MT:0005285 ! unsaturated fatty acid level created_by: caripark creation_date: 2008-11-11T03:26:41Z [Term] id: ID:0000521 name: heptadecanoic acid level def: "amount of a saturated fatty acid (C17H34O2) present in a sample of fat" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "fatty acid C17:0" EXACT [] synonym: "heptadecanoic acid percentage" EXACT [] synonym: "margaric acid" EXACT [] is_a: MT:0005286 ! saturated fatty acid level created_by: caripark creation_date: 2008-11-11T03:26:41Z [Term] id: ID:0000522 name: linoleic acid level def: "amount of an omega-6 unsaturated fatty acid (C18H32O2), with two carbon-carbon double bonds, present in a sample of fat" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "linoleic acid percentage" EXACT [] is_a: MT:0005285 ! unsaturated fatty acid level created_by: caripark creation_date: 2008-11-11T03:26:41Z [Term] id: ID:0000523 name: linolenic acid level def: "amount of an omega-3, polyunsaturated fatty acid (C18H30O2), with three carbon-carbon double bonds, present in a sample of fat" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "alpha-linolenic acid percentage" EXACT [] synonym: "linolenic acid percentage" EXACT [] is_a: MT:0005285 ! unsaturated fatty acid level created_by: caripark creation_date: 2008-11-11T03:26:41Z [Term] id: ID:0000524 name: myristic acid level def: "amount of a saturated fatty acid (C14H28O2), present in a sample of fat" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "myristic acid percentage" EXACT [] synonym: "tetradecanoic acid percentage" EXACT [] is_a: MT:0005286 ! saturated fatty acid level created_by: caripark creation_date: 2008-11-11T03:26:41Z [Term] id: ID:0000525 name: oleic acid level def: "amount of a monounsaturated, omega-9 fatty acid (C18H34O2), present in a sample of fat" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "oleic acid percentage" EXACT [] is_a: MT:0005285 ! unsaturated fatty acid level created_by: caripark creation_date: 2008-11-11T03:26:41Z [Term] id: ID:0000526 name: palmitic acid level def: "amount of a saturated fatty acid (C16H32O2) present in a sample of fat" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "hexadecanoic acid percentage" EXACT [] synonym: "palmitic acid percentage" EXACT [] is_a: MT:0005286 ! saturated fatty acid level created_by: caripark creation_date: 2008-11-11T03:26:41Z [Term] id: ID:0000527 name: palmitoleic acid level def: "amount of an omega-7, monounsaturated fatty acid (C16H30O2) present in a sample of fat" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "palmitoleic acid percentage" EXACT [] is_a: MT:0005285 ! unsaturated fatty acid level created_by: caripark creation_date: 2008-11-11T03:26:41Z [Term] id: ID:0000528 name: stearic acid level def: "amount of a saturated fatty acid (C18H36O2) present in a sample of fat" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "stearic acid percentage" EXACT [] is_a: MT:0005286 ! saturated fatty acid level created_by: caripark creation_date: 2008-11-11T03:26:41Z [Term] id: ID:0000529 name: androstenone flavor in meat def: "perceived urine-like flavor in the meat or fat of some uncastrated male pigs" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of ID:0000102 ! meat flavor created_by: caripark creation_date: 2008-11-11T03:29:36Z [Term] id: ID:0000531 name: pork flavor in fat subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:29:36Z [Term] id: ID:0000532 name: pork flavor in lean subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:29:36Z [Term] id: ID:0000533 name: skatole flavor in meat def: "perceived manure-like flavor in the meat or fat of some uncastrated male pigs" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of ID:0000102 ! meat flavor created_by: caripark creation_date: 2008-11-11T03:29:36Z [Term] id: ID:0000536 name: boar flavor in fat subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:29:36Z [Term] id: ID:0000537 name: boar flavor in lean subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:29:36Z [Term] id: ID:0000539 name: meat flavor intensity def: "scoring scale ranging from no flavor to intense flavor" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "flavor score" EXACT [] synonym: "taste intensity" EXACT [] relationship: part_of ID:0000102 ! meat flavor created_by: caripark creation_date: 2008-11-11T03:29:36Z [Term] id: ID:0000541 name: off-flavor score def: "Detection of any flavor that cannot be described as \"normal\". Examples include sour, bitter, earthy, and metallic." [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "abnormal flavor" EXACT [] is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:29:36Z [Term] id: ID:0000542 name: pork flavor in fat subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:29:36Z [Term] id: ID:0000543 name: pork flavor in lean subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:29:36Z [Term] id: ID:0000545 name: meat color - chroma def: "a measure of meat color intensity or saturation, =(a^2+b^2)^0.5" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "saturation index" EXACT [] relationship: part_of ID:0000104 ! meat color created_by: caripark creation_date: 2008-11-11T03:33:19Z [Term] id: ID:0000546 name: meat color a def: "objective measure of meat redness, measured by a colorimeter" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of ID:0000104 ! meat color created_by: caripark creation_date: 2008-11-11T03:33:19Z [Term] id: ID:0000547 name: meat color b def: "objective measure of meat yellowness, measured by a colorimeter" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of ID:0000104 ! meat color created_by: caripark creation_date: 2008-11-11T03:33:19Z [Term] id: ID:0000548 name: meat color L def: "objective meat color variable for lightness/darkness, based on the amount of light reflected off the surface of the meat" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of ID:0000104 ! meat color created_by: caripark creation_date: 2008-11-11T03:33:19Z [Term] id: ID:0000549 name: meat color score def: "subjective determination of meat color, on a scale ranging from pale to dark" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of ID:0000104 ! meat color created_by: caripark creation_date: 2008-11-11T03:33:19Z [Term] id: ID:0000550 name: hematin pigmentation def: "hematin pigment content in fresh muscle" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "haematin pigmentation" EXACT [] relationship: part_of ID:0000104 ! meat color created_by: caripark creation_date: 2008-11-11T03:33:19Z [Term] id: ID:0000551 name: meat color - hue def: "perceived meat color due to the dominant wavelength reflected=arctan(b/a)" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "hue angle" EXACT [] relationship: part_of ID:0000104 ! meat color created_by: caripark creation_date: 2008-11-11T03:33:19Z [Term] id: ID:0000552 name: light reflection subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:33:19Z [Term] id: ID:0000553 name: meat brightness subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:33:19Z [Term] id: ID:0000554 name: bone/lean meat ratio in ham def: "Weight of ham bone divided by the weight of lean meat in ham" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: ID:0000555 name: dressing A def: "Weight of ham meat relative to carcass weight (%)" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: ID:0000556 name: dressing B def: "Weight of bone-in ham relative to carcass weight (%)" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: ID:0000557 name: carcass fat-free weight def: "weight of a carcass following slaughter and removal of the head, hide, intestinal tract, and internal organs, and subtracting the weight of fat" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: ID:0000114 ! carcass weight created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: ID:0000558 name: foreloin weight post-dissection subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: ID:0000559 name: foreloin weight pre-dissection subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: ID:0000560 name: ham external fat weight def: "weight of fat trimmed from the surface of the ham" [CP:Cari Park_Iowa State University curator] subset: slim_pig xref: CP:Cari Park_Iowa State University curator relationship: part_of ID:0000563 ! ham weight created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: ID:0000561 name: ham muscle weight def: "weight of ham with bone, skin, and fat removed" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "ham meat weight" EXACT [] is_a: ID:0000712 ! skeletal muscle weight relationship: part_of ID:0000563 ! ham weight created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: ID:0000562 name: ham percent def: "Weight of the untrimmed ham expressed as a percentage of carcass weight" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: ID:0000563 name: ham weight def: "weight of the untrimmed cut of meat from the hind leg of the pig" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: ID:0000714 ! product weight relationship: part_of ID:0000689 ! hindlimb weight created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: ID:0000564 name: lean cuts subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: ID:0000565 name: lean mass (weight) def: "Total weight of the trimmed wholesale meat cuts" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "lean meat weight" EXACT [] is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: ID:0000566 name: lean meat + bone in back def: "Weight of meat and bone in the loin (fat removed), expressed as a proportion of carcass weight" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: ID:0000567 name: lean meat + bone in ham + back def: "Total weight of meat and bone in loin and ham, expressed as a proportion of carcass weight" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: ID:0000568 name: lean percentage def: "An estimation of the percentage of lean meat in a carcass, based on various muscle and fat measurements" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: ID:0000569 name: lean thickness between 3rd and 4th rib subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: ID:0000570 name: loin and belly cut def: "Weight of the major wholesale cuts of loin and belly, expressed as a percentage of carcass weight" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "loin and belly percentage" EXACT [] is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: ID:0000571 name: loin and ham percentage def: "Weight of the loin and ham, expressed as a percentage of carcass weight" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: ID:0000572 name: loin and neck meat weight def: "Weight of the loin and neck following the removal of external fat" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: ID:0000574 name: longissimus muscle area def: "cross-sectional area of the loin muscle (longissimus dorsi)" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig synonym: "loin eye area" EXACT [] synonym: "loin muscle area" EXACT [] synonym: "rib eye area" EXACT [] is_a: ID:0000706 ! longissimus dorsi morphology created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: ID:0000575 name: longissimus muscle depth def: "the depth/diameter of the longissimus dorsi at a given point" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "eye muscle depth" EXACT [] synonym: "loin height" EXACT [] synonym: "loin muscle depth" EXACT [] is_a: ID:0000706 ! longissimus dorsi morphology created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: ID:0000576 name: loin percent def: "Weight of the loin expressed as a percentage of carcass weight" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: ID:0000578 name: longissimus dorsi length def: "length of the longissimus dorsi muscle" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "loin length" EXACT [] synonym: "longissimus muscle length" EXACT [] is_a: ID:0000706 ! longissimus dorsi morphology created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: ID:0000579 name: meat area on longissimus dorsi at 13th/14th rib subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: ID:0000580 name: muscle + diaphragm weight subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: ID:0000581 name: muscle weight subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: ID:0000582 name: shoulder muscle weight def: "Weight of the cut of meat from the upper portion of the front leg of the pig, trimmed of fat" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "shoulder meat weight" EXACT [] is_obsolete: true created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: ID:0000583 name: loin muscle area at 4th-5th rib def: "Cross-sectional area of the loin muscle (longissimus dorsi) between the 4th and 5th rib" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:01:52Z [Term] id: ID:0000584 name: loin muscle area at the middle subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:01:52Z [Term] id: ID:0000585 name: FOM loin depth subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:02:23Z [Term] id: ID:0000586 name: loin depth at the last ribs subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:02:23Z [Term] id: ID:0000587 name: smell intensity (meat) def: "a subjective score describing the perceived odor intensity of cooked meat" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of ID:0000106 ! meat odor created_by: caripark creation_date: 2008-11-11T04:05:30Z [Term] id: ID:0000588 name: smell intensity (fat) def: "a subjective score describing the perceived odor intensity of cooked fat removed from a cut of meat" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of ID:0000106 ! meat odor created_by: caripark creation_date: 2008-11-11T04:05:30Z [Term] id: ID:0000589 name: sub-acid smell def: "A subjective score describing the intensity of an acidic or sour odor in cooked meat" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:05:30Z [Term] id: ID:0000590 name: subjective abnormal odor subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:05:30Z [Term] id: ID:0000591 name: meat odor acceptability subset: slim_pig synonym: "overall acceptability score" EXACT [] is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:05:30Z [Term] id: ID:0000592 name: pork odor subset: slim_pig relationship: part_of ID:0000106 ! meat odor created_by: caripark creation_date: 2008-11-11T04:05:30Z [Term] id: ID:0000593 name: pH 24 hr post-mortem (ham) def: "pH of the semimembranosus muscle 24 hours after slaughter" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:09:18Z [Term] id: ID:0000594 name: pH 24 hr post-mortem (loin) def: "pH of the longissimus dorsi muscle 24 hours after slaughter" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:09:18Z [Term] id: ID:0000595 name: pH 45 min post-mortem def: "Muscle pH 45 minutes post-mortem" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:09:18Z [Term] id: ID:0000596 name: pH in biceps femoris muscle def: "relative acidity or alkalinity in the biceps femoris muscle, as measured by the concentration of hydrogen ion" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of ID:0000685 ! muscle pH created_by: caripark creation_date: 2008-11-11T04:09:18Z [Term] id: ID:0000597 name: pH in longissimus dorsi muscle def: "relative acidity or alkalinity in the longissimus dorsi muscle, as measured by the concentration of hydrogen ion" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of ID:0000685 ! muscle pH created_by: caripark creation_date: 2008-11-11T04:09:18Z [Term] id: ID:0000598 name: pH in semispinalis dorsi muscle def: "relative acidity or alkalinity in the semispinalis dorsi muscle, as measured by the concentration of hydrogen ion" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of ID:0000685 ! muscle pH created_by: caripark creation_date: 2008-11-11T04:09:18Z [Term] id: ID:0000599 name: pH in semimembranosus muscle def: "relative acidity or alkalinity in the semimembranosus muscle, as measured by the concentration of hydrogen ion" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of ID:0000685 ! muscle pH created_by: caripark creation_date: 2008-11-11T04:09:18Z [Term] id: ID:0000600 name: rigor mortis def: "development of muscle rigidity that occurs post-mortem as a result of myosin-actin cross-bridging" [CP:Cari Park_Iowa State University curator, MeSH:C23.550.260.224.617.839] subset: slim_pig is_a: MT:0005395 ! other trait created_by: caripark creation_date: 2008-11-11T04:11:37Z [Term] id: ID:0000601 name: average instron (star probe) force def: "Amount of force (kg) necessary to puncture and/or compress a cut of cooked meat" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: ID:0000602 name: meat chewiness def: "evaluation of the total number of chews required to sufficiently break up meat before swallowing" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "chew score" EXACT [] synonym: "chewiness score" EXACT [] relationship: part_of ID:0000109 ! meat texture created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: ID:0000603 name: cooking loss def: "decrease in the weight of a cut of meat during cooking, mostly due to moisture loss" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of ID:0000109 ! meat texture created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: ID:0000604 name: skeletal muscle fiber diameter def: "average diameter of the multinucleated cells in a cross-section of skeletal muscle" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of MT:0003399 ! skeletal muscle fiber size created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: ID:0000605 name: drip loss def: "fluid lost from fresh, uncooked meat due to passive exudation" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "purge" EXACT [] synonym: "purge loss" EXACT [] relationship: part_of ID:0000109 ! meat texture created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: ID:0000606 name: myosin isoform type I content def: "amount of myosin isoform type I present in a muscle sample, as determined by SDS-PAGE" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "fiber type 1 percentage" RELATED [] relationship: part_of ID:0000746 ! skeletal muscle fiber type created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: ID:0000607 name: myosin isoform type IIa content def: "amount of myosin isoform type IIa present in a muscle sample, as determined by SDS-PAGE" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of ID:0000746 ! skeletal muscle fiber type created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: ID:0000608 name: meat firmness def: "subjective evaluation of loin firmness following chilling of carcass" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of ID:0000109 ! meat texture created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: ID:0000609 name: meat juiciness def: "evaluation of the amount of liquid released by a piece of meat during chewing" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "juiciness score" EXACT [] relationship: part_of ID:0000109 ! meat texture created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: ID:0000610 name: lactate/diameter of white fibers subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: ID:0000611 name: moisture content def: "amount of moisture in a cut of meat, determined by the difference in weight before and after oven drying" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of ID:0000109 ! meat texture created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: ID:0000612 name: number of type IIb myofibers def: "average number of type IIb, fast glycolytic fibers in a cross-section of muscle" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "number of white myofibers" EXACT [] relationship: part_of ID:0000746 ! skeletal muscle fiber type created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: ID:0000613 name: percent cooking loss def: "Decrease in the weight of a cut of meat during cooking, mostly due to moisture loss (%)." [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: ID:0000614 name: percentage of white fibers def: "Number of white (fast-twitch) fibers/total number of fibers in a cross-section of muscle" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: ID:0000615 name: adenosine deamination def: "degree of deamination of adenosine in muscle" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "R-value" EXACT [] is_a: MT:0002106 ! muscle physiology created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: ID:0000616 name: R-value/diameter of white fibers subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: ID:0000617 name: conformation of feet and legs subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-12-19T12:57:50Z [Term] id: ID:0000618 name: meat tenderness def: "the ease with which meat is broken down during mastication" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig synonym: "tenderness score" EXACT [] relationship: part_of ID:0000109 ! meat texture created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: ID:0000619 name: water holding capacity def: "the ability of meat to retain water during cutting, heating, grinding, and pressing." [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of ID:0000109 ! meat texture created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: ID:0000620 name: feed conversion ratio def: "Ratio of amount of feed consumed to body weight gain" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:18:56Z [Term] id: ID:0000621 name: feed conversion ratio (35-55 kg) def: "Ratio of amount of feed consumed to body weight gain between 35 and 55 kg body weight" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:18:56Z [Term] id: ID:0000622 name: feed conversion ratio (55-80 kg) def: "Ratio of amount of feed consumed to body weight gain between 55 and 80 kg body weight" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:18:56Z [Term] id: ID:0000623 name: average daily feed intake def: "Average amount of feed consumed per day" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:20:49Z [Term] id: ID:0000624 name: feed intake (35-55 kg) subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:20:49Z [Term] id: ID:0000625 name: feed intake (55-80 kg) subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:20:49Z [Term] id: ID:0000627 name: thyroid-stimulating hormone subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:21:43Z [Term] id: ID:0000628 name: embryo mortality subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:27:06Z [Term] id: ID:0000629 name: fully formed pigs subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:27:06Z [Term] id: ID:0000630 name: litter weaning weight subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:27:06Z [Term] id: ID:0000631 name: mummified pigs subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:27:06Z [Term] id: ID:0000632 name: percentage stillborn subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:27:06Z [Term] id: ID:0000636 name: number of corpora lutea subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:29:40Z [Term] id: ID:0000637 name: functional nipples def: "number of nipples capable of secreting milk in response to suckling by offspring" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of MT:0001881 ! mammary gland physiology created_by: caripark creation_date: 2008-11-11T04:29:40Z [Term] id: ID:0000638 name: uterine capacity def: "number of viable fetuses a female is capable of supporting to term" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of MT:0002637 ! uterus size created_by: caripark creation_date: 2008-11-11T04:29:40Z [Term] id: ID:0000639 name: uterine horn length def: "length of the upper right or left portion of the uterus to which the uterine tube is connected" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of MT:0002637 ! uterus size created_by: caripark creation_date: 2008-11-11T04:29:40Z [Term] id: ID:0000640 name: uterine horn weight def: "weight of the upper right or left portion of the uterus to which the uterine tube is connected" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of MT:0002637 ! uterus size created_by: caripark creation_date: 2008-11-11T04:29:40Z [Term] id: ID:0000641 name: ovary weight def: "weight of the female reproductive gland containing the germ cells" [CP:Cari Park_Iowa State University curator, ISBN:0-683-40008-8 Stedman's Medical Dictionary\, 27th edition] subset: slim_pig relationship: part_of MT:0001127 ! ovary size created_by: caripark creation_date: 2008-11-11T04:29:40Z [Term] id: ID:0000642 name: uterus length def: "length of the uterus from the top of the uterine body to the cervix" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "uterine length" EXACT [] relationship: part_of MT:0002637 ! uterus size created_by: caripark creation_date: 2008-11-11T04:29:40Z [Term] id: ID:0000643 name: daily sperm production def: "average number of sperm produced per day" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: MT:0001156 ! spermatogenesis created_by: caripark creation_date: 2008-11-11T04:30:44Z [Term] id: ID:0000644 name: testes weight def: "weight of the male reproductive glands" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of MT:0001148 ! testes size created_by: caripark creation_date: 2008-11-11T04:30:44Z [Term] id: ID:0000645 name: adjusted birthing rate subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:35:38Z [Term] id: ID:0000646 name: age at delivery subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:35:38Z [Term] id: ID:0000647 name: age at breeding subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:35:38Z [Term] id: ID:0000648 name: average breeding female inventory subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:35:38Z [Term] id: ID:0000649 name: birth interval def: "time interval between birth of consecutive offspring" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_pig relationship: part_of MT:0002907 ! parturition created_by: caripark creation_date: 2008-11-11T04:35:38Z [Term] id: ID:0000650 name: birth duration def: "duration of delivery" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of MT:0002907 ! parturition created_by: caripark creation_date: 2008-11-11T04:35:38Z [Term] id: ID:0000651 name: gestation length subset: slim_cattle subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:35:38Z [Term] id: ID:0000652 name: heterogeneity of birth intervals subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:35:38Z [Term] id: ID:0000653 name: lactation length def: "period of time over which milk is produced from the mammary gland" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of MT:0001882 ! lactation created_by: caripark creation_date: 2008-11-11T04:35:38Z [Term] id: ID:0000654 name: log transformation of percentage stillborn subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:35:38Z [Term] id: ID:0000655 name: placental efficiency subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:35:38Z [Term] id: ID:0000656 name: prenatal survival subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:35:38Z [Term] id: ID:0000657 name: vigor score subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:35:38Z [Term] id: ID:0000658 name: weight of laparoscopy subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:35:38Z [Term] id: ID:0000659 name: ACTH level variations def: "Difference between post-stress and basal levels of pituitary adrenocorticotropic hormone in the blood" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2009-01-09T10:26:05Z [Term] id: ID:0000660 name: cortisol level variations def: "Difference between post-stress and basal levels of cortisol in the blood" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2009-01-09T10:27:17Z [Term] id: ID:0000661 name: lymphocyte proliferation namespace: Trait.ontology subset: slim_pig is_a: MT:0000717 ! lymphocyte number created_by: caripark creation_date: 2009-02-23T11:12:21Z [Term] id: ID:0000665 name: bacteria count def: "number of viable bacteria present (cfu)" [CP:Cari Park_Iowa State University curator] subset: slim_chkn subset: slim_pig is_a: ID:0000673 ! response to bacterial infection created_by: caripark creation_date: 2009-03-13T11:09:51Z [Term] id: ID:0000669 name: induced circulating adrenocorticotropin level namespace: Trait.ontology def: "Level of pituitary adrenocorticotropic hormone in the blood in response to an external intervention" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: MT:0002664 ! circulating adrenocorticotropin level created_by: caripark creation_date: 2009-03-30T01:49:48Z [Term] id: ID:0000670 name: circulating cortisol level def: "blood concentration of a steroid hormone secreted by the adrenal cortex which acts as an anti-inflammatory agent" [CP:Cari Park_Iowa State University curator, ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] subset: slim_pig synonym: "circulating hydrocortisone level" EXACT [] is_a: ID:0000672 ! cortisol level is_a: MT:0003366 ! circulating glucocorticoid level created_by: caripark creation_date: 2009-03-30T02:24:52Z [Term] id: ID:0000671 name: glucocorticoid level def: "concentration of the corticosteroids regulating carbohydrate metabolism and exhibiting anti-inflammatory activity" [CP:Cari Park_Iowa State University curator, ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] subset: slim_chkn subset: slim_pig is_a: MT:0003953 ! hormone level created_by: caripark creation_date: 2009-03-30T02:30:33Z [Term] id: ID:0000672 name: cortisol level def: "concentration of a steroid hormone secreted by the adrenal cortex which acts as an anti-inflammatory agent" [CP:Cari Park_Iowa State University curator, ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] subset: slim_pig synonym: "hydrocortisone level" EXACT [] is_a: ID:0000671 ! glucocorticoid level created_by: caripark creation_date: 2009-03-30T02:32:44Z [Term] id: ID:0000673 name: response to bacterial infection def: "the body's reaction to invasion and multiplication of bacteria in its tissues, or the body's reaction to components of or toxins produced by bacteria" [CP:Cari Park_Iowa State University curator] subset: slim_chkn subset: slim_pig is_a: MT:0005025 ! response to infection created_by: caripark creation_date: 2009-03-30T03:33:42Z [Term] id: ID:0000675 name: response to parasitic infection def: "the body's reaction to invasion and multiplication of parasites in its tissues, or the body's reaction to components of or toxins produced by parasites" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0005025 ! response to infection created_by: caripark creation_date: 2009-03-30T03:33:42Z [Term] id: ID:0000679 name: interleukin-2 physiology def: "characteristic related to the function of this cytokine released by helper T cells that stimulates proliferation of T lymphocytes and activated B lymphocytes" [CP:Cari Park_Iowa State University curator, ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] subset: slim_pig is_a: MT:0002529 ! interleukin physiology created_by: caripark creation_date: 2009-03-31T03:12:32Z [Term] id: ID:0000681 name: interleukin-2 activity def: "activity of this cytokine released by helper T cells that stimulates proliferation of T lymphocytes and activated B lymphocytes" [CP:Cari Park_Iowa State University curator, ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] subset: slim_pig is_a: ID:0000679 ! interleukin-2 physiology created_by: caripark creation_date: 2009-03-31T03:52:30Z [Term] id: ID:0000682 name: induced interleukin-2 activity def: "activity of interleukin-2 in response to an external intervention" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: ID:0000681 ! interleukin-2 activity created_by: caripark creation_date: 2009-03-31T03:52:54Z [Term] id: ID:0000685 name: muscle pH def: "relative acidity or alkalinity in the muscle, as measured by the concentration of hydrogen ion" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: MT:0002106 ! muscle physiology is_a: MT:0004043 ! pH regulation created_by: caripark creation_date: 2009-04-01T03:49:05Z [Term] id: ID:0000686 name: paw/hand/foot/hoof weight def: "weight of the pedal or prehensile extremity of vertebrates" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of MT:0004271 ! paw/hand/foot/hoof morphology created_by: caripark creation_date: 2009-04-01T04:28:54Z [Term] id: ID:0000687 name: forelimb weight def: "weight of the anterior extremeties" [CP:Cari Park_Iowa State University curator] subset: slim_chkn subset: slim_pig relationship: part_of MT:0000550 ! forelimb morphology created_by: caripark creation_date: 2009-04-02T08:23:43Z [Term] id: ID:0000689 name: hindlimb weight def: "weight of the posterior extremeties" [CP:Cari Park_Iowa State University curator] subset: slim_chkn subset: slim_pig relationship: part_of MT:0000556 ! hindlimb morphology created_by: caripark creation_date: 2009-04-02T11:41:35Z [Term] id: ID:0000690 name: flavor in meat subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2009-04-02T02:28:53Z [Term] id: ID:0000691 name: flavor in fat subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2009-04-02T02:29:20Z [Term] id: ID:0000693 name: unsaturated fatty acid content subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2009-04-02T04:12:49Z [Term] id: ID:0000694 name: muscle glycogen homeostasis def: "state of equilibrium in the body with respect to this readily converted carbohydrate reserve, found in most tissues, especially liver and muscle" [CP:Cari Park_Iowa State University curator, ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] subset: slim_pig is_a: MT:0002106 ! muscle physiology created_by: caripark creation_date: 2009-04-03T09:59:55Z [Term] id: ID:0000701 name: product trait def: "any measurable or observable characteristic of a product produced by or obtained from the body of an animal" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0000001 ! Trait created_by: caripark creation_date: 2009-04-06T02:14:59Z [Term] id: ID:0000706 name: longissimus dorsi morphology namespace: Trait.ontology def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the muscle of the back which is the intermediate and largest of the continuations of the Sacrospinalis" [ISBN:1587341026 "Gray's Anatomy"] subset: slim_cattle subset: slim_pig is_a: MT:0004248 ! epaxial muscle morphology created_by: caripark creation_date: 2009-04-23T01:15:57Z [Term] id: ID:0000707 name: skeletal muscle lean weight def: "actual or estimated weight of skeletal muscle, minus the associated fat" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "estimated carcass lean content" NARROW [] synonym: "lean mass" NARROW [] synonym: "lean meat weight" NARROW [] synonym: "lean muscle mass" EXACT [] is_a: ID:0000712 ! skeletal muscle weight created_by: caripark creation_date: 2009-04-27T02:57:55Z [Term] id: ID:0000708 name: reflectance value def: "a measurement of light reflection from the surface of meat, used to measure color or quantitate myoglobin forms" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "light reflection" EXACT [] relationship: part_of ID:0000104 ! meat color created_by: caripark creation_date: 2009-04-28T10:04:07Z [Term] id: ID:0000709 name: shoulder muscle weight def: "weight of the cut of meat from the upper portion of the front leg of the pig, trimmed of fat" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: ID:0000712 ! skeletal muscle weight relationship: part_of ID:0000422 ! shoulder weight created_by: caripark creation_date: 2009-04-28T01:47:10Z [Term] id: ID:0000712 name: skeletal muscle weight def: "weight of one or more of the striated muscles attached to the skeleton" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0003398 ! skeletal muscle size is_a: MT:0004233 ! muscle weight created_by: caripark creation_date: 2009-05-01T04:13:32Z [Term] id: ID:0000713 name: myosin isoform type IIb content def: "amount of myosin isoform type IIb present in a muscle sample, as determined by SDS-PAGE" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of ID:0000746 ! skeletal muscle fiber type created_by: caripark creation_date: 2009-05-01T05:21:37Z [Term] id: ID:0000714 name: product weight def: "weight of a product produced by or obtained from the body of an animal" [CP:Cari Park_Iowa State University curator] subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: ID:0000701 ! product trait created_by: caripark creation_date: 2009-05-04T03:19:20Z [Term] id: ID:0000718 name: pH in semispinalis capitis muscle def: "relative acidity or alkalinity in the semispinalis capitis muscle, as measured by the concentration of hydrogen ion" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of ID:0000685 ! muscle pH created_by: caripark creation_date: 2009-05-05T03:53:48Z [Term] id: ID:0000719 name: ham bone weight def: "weight of bone in the ham" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of ID:0000563 ! ham weight created_by: caripark creation_date: 2009-05-06T09:06:13Z [Term] id: ID:0000720 name: nonfunctional nipples def: "number of nipples incapable of secreting milk in response to suckling by offspring" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: MT:0001881 ! mammary gland physiology created_by: caripark creation_date: 2009-05-06T09:39:43Z [Term] id: ID:0000721 name: band neutrophil count def: "number of immature neutrophils undergoing granulopoiesis; nuclei are unsegmented" [CP:Cari Park_Iowa State University curator, ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] subset: slim_pig synonym: "band-formed neutrophil count" EXACT [] is_a: MT:0000222 ! neutrophil count created_by: caripark creation_date: 2009-05-06T10:28:10Z [Term] id: ID:0000724 name: phytohemagglutin (PHA)-induced lymphocyte proliferation def: "proliferation of lymphocytes upon stimulation with phytohemagglutinin, a mucoprotein isolated from the kidney bean" [CP:Cari Park_Iowa State University curator, MeSH:D12.776.765.678.750] subset: slim_pig is_a: ID:0000393 ! mitogen-induced lymphocyte proliferation created_by: caripark creation_date: 2009-05-06T01:13:37Z [Term] id: ID:0000729 name: carcass temperature def: "temperature of the carcass at a given time post-mortem" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: MT:0005535 ! body temperature created_by: caripark creation_date: 2009-05-07T09:43:03Z [Term] id: ID:0000742 name: sarcomere length def: "length of the segment of a myofibril between two Z lines" [CP:Cari Park_Iowa State University curator, ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] subset: slim_pig is_a: MT:0004090 ! sarcomere morphology created_by: caripark creation_date: 2009-05-07T02:45:53Z [Term] id: ID:0000743 name: skeletal muscle fiber number def: "number of large multinucleated cells in a cross-section of skeletal muscle" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of MT:0003084 ! skeletal muscle fiber morphology created_by: caripark creation_date: 2009-05-07T03:19:34Z [Term] id: ID:0000744 name: neck weight def: "weight of the cut of meat from the dorsal side of the pig, anterior to the third rib" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: ID:0000714 ! product weight created_by: caripark creation_date: 2009-05-07T03:37:37Z [Term] id: ID:0000745 name: jowl weight def: "weight of the cut of meat obtained from the cheek of the pig" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: ID:0000714 ! product weight created_by: caripark creation_date: 2009-05-07T03:46:46Z [Term] id: ID:0000746 name: skeletal muscle fiber type def: "classification of skeletal muscle fibers based on myosin isoform content and oxidative/glycolytic capacity" [CP:Cari Park_Iowa State University curator] subset: slim_pig is_a: MT:0002106 ! muscle physiology created_by: caripark creation_date: 2009-05-07T03:52:39Z [Term] id: ID:0000747 name: number of type I myofibers def: "average number of type I, slow oxidative fibers in a cross-section of muscle" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of ID:0000746 ! skeletal muscle fiber type created_by: caripark creation_date: 2009-05-07T07:22:41Z [Term] id: ID:0000748 name: number of type IIa myofibers def: "average number of type IIa, fast oxidative fibers in a cross-section of muscle" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of ID:0000746 ! skeletal muscle fiber type created_by: caripark creation_date: 2009-05-07T07:22:41Z [Term] id: ID:0000749 name: area of type I myofibers namespace: Trait.ontology def: "total area in a cross-section of skeletal muscle occupied by type I, slow oxidative fibers" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of MT:0003399 ! skeletal muscle fiber size created_by: caripark creation_date: 2009-05-07T07:31:16Z [Term] id: ID:0000750 name: area of type IIa myofibers namespace: Trait.ontology def: "total area in a cross-section of skeletal muscle occupied by type IIa, fast oxidative fibers" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of MT:0003399 ! skeletal muscle fiber size created_by: caripark creation_date: 2009-05-07T07:31:16Z [Term] id: ID:0000751 name: area of type IIb myofibers namespace: Trait.ontology def: "total area in a cross-section of skeletal muscle occupied by type IIb, fast glycolytic fibers" [CP:Cari Park_Iowa State University curator] subset: slim_pig relationship: part_of MT:0003399 ! skeletal muscle fiber size created_by: caripark creation_date: 2009-05-07T07:31:16Z [Term] id: ID:0000752 name: number of IgM-positive B cells def: "subpopulation of peripheral blood mononuclear cells that stain positive for immunoglobulin M" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "IgM-positive leukocytes" EXACT [] is_a: MT:0002459 ! B cell physiology created_by: caripark creation_date: 2009-05-07T07:45:57Z [Term] id: ID:0000753 name: number of CD4+ T cells def: "subpopulation of peripheral blood mononuclear cells that stain positive for CD4" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "number of CD4-positive leukocytes" EXACT [] is_a: MT:0005463 ! CD4+ T cell physiology created_by: caripark creation_date: 2009-05-07T07:50:21Z [Term] id: ID:0000754 name: number of CD8+ T cells def: "subpopulation of peripheral blood mononuclear cells that stain positive for CD8" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "number of CD8-positive leukocytes" EXACT [] is_a: MT:0004392 ! CD8+ T cell physiology created_by: caripark creation_date: 2009-05-07T07:51:21Z [Term] id: ID:0000755 name: number of N1c-positive T cells def: "subpopulation of peripheral blood mononuclear cells expressing gamma and delta chains of the T cell receptor" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "number of N1c-positive leukocytes" EXACT [] is_a: MT:0002444 ! T cell physiology created_by: caripark creation_date: 2009-05-07T07:53:29Z [Term] id: ID:0000756 name: number of MHCII-positive B cells def: "subpopulation of peripheral blood mononuclear cells that stain positive for major histocompatibility complex class II" [CP:Cari Park_Iowa State University curator] subset: slim_pig synonym: "MHCII-positive leukocytes" EXACT [] is_a: MT:0002459 ! B cell physiology created_by: caripark creation_date: 2009-05-07T07:57:05Z [Term] id: MT:0000001 name: Trait namespace: Trait.ontology subset: slim_cattle subset: slim_chkn subset: slim_pig [Term] id: MT:0000002 name: head size namespace: Trait.ontology def: "physical dimensions of the head" [smb:MGI_curator] subset: slim_pig is_a: MT:0000432 ! head morphology [Term] id: MT:0000003 name: adipose tissue morphology namespace: Trait.ontology alt_id: MT:0000011 subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "adipose tissue abnormalities" EXACT [] is_a: MT:0005375 ! adipose tissue trait [Term] id: MT:0000013 name: fat distribution namespace: Trait.ontology subset: slim_cattle subset: slim_pig is_a: MT:0000003 ! adipose tissue morphology [Term] id: MT:0000137 name: vertebrae morphology namespace: Trait.ontology alt_id: MT:0001538 def: "malformed bony segment of the spinal column" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_cattle subset: slim_pig synonym: "abnormal vertebrae" EXACT [] synonym: "vertebra defect" EXACT [] is_a: MT:0002114 ! axial skeleton morphology [Term] id: MT:0000138 name: vertebrae number namespace: Trait.ontology def: "missing bony segments of the spinal column" [J:35802] subset: slim_cattle subset: slim_pig synonym: "absence of vertebrae" EXACT [] is_a: MT:0000137 ! vertebrae morphology [Term] id: MT:0000179 name: blood chemistry namespace: Trait.ontology alt_id: MT:0001546 def: "anomalous concentrations of proteins, minerals, nutrients, gases, or other substances in the blood" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "blood chemistry abnormalities" EXACT [] is_a: MT:0005428 ! clinical chemistry [Term] id: MT:0000188 name: circulating glucose level namespace: Trait.ontology alt_id: MT:0001557 def: "anomalous concentration in the blood of this major monosaccharide of the body; it is an important energy source" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_chkn subset: slim_pig synonym: "abnormal blood glucose level" EXACT [] is_a: MT:0002078 ! glucose homeostasis [Term] id: MT:0000217 name: white blood cell count namespace: Trait.ontology alt_id: MT:0001587 def: "anomalies in the number of leukocytes" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings] subset: slim_cattle subset: slim_pig synonym: "abnormal WBC cell" EXACT [] synonym: "abnormal white blood cell number" EXACT [] synonym: "leukocyte count abnormalities" EXACT [] synonym: "white blood cell count abnormalities" EXACT [] synonym: "white blood cell number abnormalities" EXACT [] is_a: MT:0000716 ! immune system cell morphology is_a: MT:0002429 ! blood cell morphology/development [Term] id: MT:0000221 name: WBC count namespace: Trait.ontology def: "fewer than normal numbers of WBCs" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings] subset: slim_cattle subset: slim_pig synonym: "decreased leukocyte count" EXACT [] synonym: "decreased WBC number" EXACT [] synonym: "leukocytopenia" EXACT [] synonym: "leukopenia" EXACT [] synonym: "lymphopenia" EXACT [] is_a: MT:0000217 ! white blood cell count [Term] id: MT:0000222 name: neutrophil count namespace: Trait.ontology def: "fewer than normal neutrophil numbers" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_pig synonym: "decreased neutrophil number" EXACT [] synonym: "neutropenia" EXACT [] synonym: "segmented neutrophil count" EXACT [] is_a: MT:0000334 ! granulocyte number is_a: MT:0002415 ! neutrophil morphology/development [Term] id: MT:0000266 name: cardiac morphology namespace: Trait.ontology alt_id: MT:0000271 def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the organ that pumps blood through the body" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] subset: slim_chkn subset: slim_pig synonym: "heart morphology" RELATED [] xref: GO:0007505 xref: MP:0000266 is_a: MT:0002127 ! cardiovascular system morphology [Term] id: MT:0000334 name: granulocyte number namespace: Trait.ontology alt_id: MT:0000723 def: "fewer than expected number of leukocytes that have abundant granules in the cytoplasm: basophils, neutrophils, or eosinophils" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_pig synonym: "decreased granulocyte number" EXACT [] synonym: "granulocytopenia" EXACT [] is_a: MT:0000221 ! WBC count is_a: MT:0002441 ! granulocyte morphology/development [Term] id: MT:0000367 name: coat/ hair morphology namespace: Trait.ontology def: "anomalous color, structure, growth, or texture of the hair" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_pig synonym: "abnormal coat/ hair" EXACT [] synonym: "coat/ hair abnormalities" EXACT [] synonym: "coat/ hair anomalies" EXACT [] is_a: MT:0005393 ! skin/coat/nails/feathers trait [Term] id: MT:0000428 name: craniofacial morphology namespace: Trait.ontology def: "anomalous structure or development of the face and/or cranium" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_pig synonym: "craniofacial abnormalities" EXACT [] synonym: "craniofacial defects" EXACT [] is_a: MT:0005382 ! craniofacial trait [Term] id: MT:0000432 name: head morphology namespace: Trait.ontology def: "anomalous structure or development of the portion of the body containing the brain and organs of sight, hearing, taste, and smell" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_pig synonym: "abnormal head" EXACT [] synonym: "head abnormalities" EXACT [] is_a: MT:0000428 ! craniofacial morphology [Term] id: MT:0000462 name: digestive system morphology namespace: Trait.ontology alt_id: MT:0000463 alt_id: MT:0002141 def: "anomalous structure of the system dedicated to the mechanical, chemical, and enzymatic processing of food" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_chkn subset: slim_pig synonym: "digestive system abnormalities" EXACT [] synonym: "digestive system defects" EXACT [] synonym: "digestive system: dysmorphology" EXACT [] xref: MGI:2173601 is_a: MT:0005381 ! digestive/alimentary trait [Term] id: MT:0000477 name: intestine morphology namespace: Trait.ontology alt_id: MT:0000475 def: "malformation of the digestive tube passing from the stomach to the anus" [J:48968] subset: slim_pig synonym: "abnormal bowel wall" EXACT [] synonym: "abnormal intestine" EXACT [] synonym: "bowel wall abnormalities" EXACT [] synonym: "intestinal abnormalities" EXACT [] is_a: MT:0000462 ! digestive system morphology [Term] id: MT:0000496 name: small intestine morphology namespace: Trait.ontology def: "structural or developmental anomalies of the intestinum tenue" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_pig synonym: "abnormal small intestine" EXACT [] synonym: "small intestine abnormalities" EXACT [] is_a: MT:0000477 ! intestine morphology [Term] id: MT:0000545 name: limbs/digits/tail morphology namespace: Trait.ontology def: "morphological or developmental anomaly of the digits, autopod, limbs, or tail" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "abnormal extremities" EXACT [] synonym: "abnormal extremity morphology" EXACT [] synonym: "extremities abnormalities" EXACT [] synonym: "extremities defects" EXACT [] is_a: MT:0005371 ! limbs/digits/tail trait [Term] id: MT:0000548 name: limb length namespace: Trait.ontology def: "average length of the extremities" [tc:Teresa Chu_Mouse Genome Informatics Curator] subset: slim_pig synonym: "leg length" RELATED [] is_a: MT:0002109 ! limb morphology [Term] id: MT:0000550 name: forelimb morphology namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the anterior extremeties" [tc:Teresa Chu_Mouse Genome Informatics Curator] subset: slim_chkn subset: slim_pig synonym: "forelimb abnormalities" EXACT [] is_a: MT:0002109 ! limb morphology [Term] id: MT:0000556 name: hindlimb morphology namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the posterior extremeties" [tc:Teresa Chu_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "hindlimb abnormalities" EXACT [] is_a: MT:0002109 ! limb morphology [Term] id: MT:0000559 name: femur morphology namespace: Trait.ontology def: "structural anomaly of the long bone of the thigh" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_pig synonym: "abnormal femur" EXACT [] is_a: MT:0003723 ! long bone morphology [Term] id: MT:0000598 name: liver morphology namespace: Trait.ontology alt_id: MT:0000595 def: "malformation or absence of this bile-secreting exocrine gland, which is important for detoxification; for fat, carbohydrate, and protein metabolism; and for glycogen storage" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator, J:23170, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_chkn subset: slim_pig synonym: "abnormal liver" EXACT [] synonym: "Liver" EXACT [] is_a: MT:0002138 ! liver/biliary system morphology [Term] id: MT:0000627 name: mammary gland morphology namespace: Trait.ontology def: "malformation of the milk-secreting gland that lies within the breast; usually rudimentary in males" [J:70183] subset: slim_cattle subset: slim_pig synonym: "abnormal mammary glands" EXACT [] is_a: MT:0001119 ! female reproductive anatomy is_a: MT:0002163 ! gland morphology [Term] id: MT:0000653 name: sex gland morphology namespace: Trait.ontology def: "anomalous structure of any of the organized aggregations of cells that function as secretory or excretory organs and are associated with reproduction" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_pig synonym: "abnormal sex glands" EXACT [] is_a: MT:0002163 ! gland morphology [Term] id: MT:0000676 name: water content namespace: Trait.ontology def: "more or less than the normal total amount of water retained in the body" [il:Ira Lu_Mouse Genome Informatics Curator] subset: slim_pig is_a: MT:0005451 ! body composition [Term] id: MT:0000685 name: immune system morphology namespace: Trait.ontology def: "morphological anomalies in the organs or cells associated with the development and formation of lymphocytes" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "immune system abnormalities" EXACT [] synonym: "lymphoid system abnormalities" EXACT [] synonym: "lymphopoietic system abnormalities" EXACT [] is_a: MT:0005387 ! immune system trait [Term] id: MT:0000716 name: immune system cell morphology namespace: Trait.ontology def: "anomalous structure, development, or number of immune cells" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] comment: new pslim term subset: slim_cattle subset: slim_pig synonym: "abnormal immune cell" EXACT [] synonym: "immune system: cellular abnormalities" EXACT [] is_a: MT:0000685 ! immune system morphology [Term] id: MT:0000717 name: lymphocyte number namespace: Trait.ontology def: "deviation from the normal number of white blood cells" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_pig synonym: "Abnormal Immune Cell Number" EXACT [] is_a: MT:0000221 ! WBC count is_a: MT:0002401 ! lymphopoiesis is_a: MT:0002619 ! lymphocyte morphology/development [Term] id: MT:0000759 name: skeletal muscle morphology namespace: Trait.ontology def: "anomalous structure of any of the striated muscle fibers connected at either or both extremities with the bony framework of the body" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "abnormal skeletal muscle" EXACT [] synonym: "skeletal muscle abnormalities" EXACT [] is_a: MT:0002108 ! muscle morphology [Term] id: MT:0001116 name: gonad size namespace: Trait.ontology def: "reduced size of the testis or the ovary" [J:34193, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_cattle subset: slim_pig synonym: "hypogonad" EXACT [] synonym: "hypogonadism" EXACT [] is_a: MT:0002211 ! primary sex determination [Term] id: MT:0001119 name: female reproductive anatomy namespace: Trait.ontology def: "anomalous structure of the organs associated with producing offspring in the gender that bears the offspring" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_cattle subset: slim_pig is_a: MT:0002160 ! reproductive system morphology [Term] id: MT:0001120 name: uterus morphology namespace: Trait.ontology def: "malformation or absence of the female muscular organ of gestation" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] subset: slim_pig is_a: MT:0001119 ! female reproductive anatomy [Term] id: MT:0001126 name: ovary morphology namespace: Trait.ontology def: "malformed female reproductive gland containing the germ cells" [J:35782, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_pig synonym: "abnormal gonad" EXACT [] synonym: "abnormal ovaries" EXACT [] is_a: MT:0000653 ! sex gland morphology is_a: MT:0001119 ! female reproductive anatomy [Term] id: MT:0001127 name: ovary size namespace: Trait.ontology def: "reduced size of the female reproductive gland containing the germ cells" [J:35782, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_pig synonym: "small ovaries" EXACT [] is_a: MT:0001116 ! gonad size is_a: MT:0001126 ! ovary morphology [Term] id: MT:0001145 name: male reproductive anatomy namespace: Trait.ontology def: "anomalous structure of the organs associated with producing offspring in the gender that produces spermatozoa" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_cattle subset: slim_pig is_a: MT:0002160 ! reproductive system morphology [Term] id: MT:0001146 name: testis morphology namespace: Trait.ontology def: "anomalous structure of the male reproductive glands" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_cattle subset: slim_pig synonym: "abnormal gonad" EXACT [] synonym: "abnormal testes" EXACT [] is_a: MT:0000653 ! sex gland morphology is_a: MT:0001145 ! male reproductive anatomy [Term] id: MT:0001148 name: testes size namespace: Trait.ontology def: "increased size of the male reproductive glands" [J:63229, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_cattle subset: slim_pig synonym: "enlarged testis" EXACT [] synonym: "macroorchidism" EXACT [] is_a: MT:0001116 ! gonad size is_a: MT:0001146 ! testis morphology [Term] id: MT:0001156 name: spermatogenesis namespace: Trait.ontology def: "incomplete maturation or aberrant formation of the male gametes" [J:58959] subset: slim_pig synonym: "abnormal sperm development" EXACT [] is_a: MT:0001929 ! gametogenesis [Term] id: MT:0001186 name: pigmentation trait namespace: Trait.ontology subset: slim_cattle subset: slim_pig is_a: MT:0000001 ! Trait [Term] id: MT:0001191 name: skin condition namespace: Trait.ontology def: "anomalous state of the skin" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_pig is_a: MT:0002096 ! skin condition/ morphology [Term] id: MT:0001200 name: skin thickness namespace: Trait.ontology def: "greater depth of skin" [J:47225] subset: slim_pig is_a: MT:0001191 ! skin condition [Term] id: MT:0001253 name: body height namespace: Trait.ontology def: "anomalous shoulder to floor distance compared to controls" [dlb:Donna Burkart_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_pig xref: GO:0040007 xref: GO:0040014 is_a: MT:0003956 ! body size [Term] id: MT:0001256 name: body length namespace: Trait.ontology def: "anomalous crown to tail distance compared to controls" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_pig xref: GO:0040007 xref: GO:0040014 is_a: MT:0003956 ! body size [Term] id: MT:0001259 name: body weight namespace: Trait.ontology def: "anomaly in average weight compared to controls" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0002089 ! postnatal growth/weight/body size [Term] id: MT:0001392 name: locomotor activity namespace: Trait.ontology subset: slim_pig synonym: "locomotion" EXACT [] is_a: MT:0003491 ! voluntary movement [Term] id: MT:0001413 name: response to new environment namespace: Trait.ontology subset: slim_pig is_a: MT:0001449 ! learning/ memory is_a: MT:0003107 ! response to novelty [Term] id: MT:0001417 name: exploration in new environment namespace: Trait.ontology subset: slim_pig synonym: "exploration" RELATED [] is_a: MT:0001413 ! response to new environment [Term] id: MT:0001431 name: eating behavior namespace: Trait.ontology alt_id: MT:0001430 subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0002069 ! eating/drinking behavior [Term] id: MT:0001449 name: learning/ memory namespace: Trait.ontology subset: slim_pig is_a: MT:0002063 ! learning/memory/conditioning [Term] id: MT:0001510 name: coat appearance namespace: Trait.ontology def: "coat that looks different from the usual state" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_pig synonym: "abnormal appearance of the fur" EXACT [] is_a: MT:0000367 ! coat/ hair morphology [Term] id: MT:0001547 name: lipid level namespace: Trait.ontology def: "anomalous concentrations of fat-soluble substances (molecules composed of carbon and hydrogen and are characteristically insoluble in water) in the body" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0002118 ! lipid homeostasis [Term] id: MT:0001570 name: circulating enzyme level namespace: Trait.ontology alt_id: MT:0000201 def: "aberrant concentration in the blood of any of the proteins that act as catalysts for biological reactions" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_chkn subset: slim_pig synonym: "abnormal blood enzyme level" EXACT [] is_a: MT:0005319 ! enzyme/ coenzyme level is_a: MT:0005416 ! circulating protein level [Term] id: MT:0001601 name: myelopoiesis namespace: Trait.ontology alt_id: MT:0000169 def: "atypical process of bone marrow cell formation and/or bone marrow-derived blood cells" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8, tc:Teresa Chu_Mouse Genome Informatics Curator] subset: slim_pig synonym: "myelopoiesis abnormalities" EXACT [] is_a: MT:0005460 ! leukopoiesis [Term] id: MT:0001661 name: life span namespace: Trait.ontology def: "persistence of life for a longer period than is normal for an organism" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_pig synonym: "extended lifespan" EXACT [] is_a: MT:0005372 ! life span/aging trait [Term] id: MT:0001731 name: postnatal growth rate namespace: Trait.ontology def: "anomaly in reaching a developmental stage or stages after birth" [il:Ira Lu_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0002089 ! postnatal growth/weight/body size [Term] id: MT:0001764 name: homeostasis namespace: Trait.ontology def: "anomaly in the state of equilibrium in the body with respect to various functions and to chemical composition of the fluids and tissues" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "homeostasis abnormalities" EXACT [] is_a: MT:0005376 ! homeostasis/metabolism trait [Term] id: MT:0001781 name: white fat amount namespace: Trait.ontology alt_id: MT:0000007 subset: slim_cattle subset: slim_pig synonym: "abnormal white fat" EXACT [] is_a: MT:0002970 ! white fat morphology is_a: MT:0005452 ! body fat amount [Term] id: MT:0001790 name: immune system physiology namespace: Trait.ontology alt_id: MT:0001789 def: "deviation from the normal function of the immune system" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] comment: pslim term (new) subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "Immune System" EXACT [] synonym: "immune system/response abnormalities" EXACT [] synonym: "immune system: response/ function abnormalities" EXACT [] xref: GO:0006955 is_a: MT:0005387 ! immune system trait [Term] id: MT:0001793 name: susceptibility to infection namespace: Trait.ontology alt_id: MT:0002548 def: "a change in the likelihood that an organism will develop ill effects from a pathogenic invasion or from components of or toxins produced by pathogens" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_cattle subset: slim_pig synonym: "altered resistance to infection" EXACT [] is_a: MT:0005025 ! response to infection [Term] id: MT:0001800 name: humoral immune response namespace: Trait.ontology def: "abnormal immune function mediated by antibodies" [Immunobiology_The Immune System in Health and Disease:ISBN 0-8153-1691-7] subset: slim_chkn subset: slim_pig synonym: "antibody response" EXACT [] synonym: "antibody-mediated immune response abnormalities" EXACT [] synonym: "humoral immune response dysfunction" EXACT [] is_a: MT:0001790 ! immune system physiology [Term] id: MT:0001805 name: circulating IgG level namespace: Trait.ontology alt_id: MT:0001815 def: "less than normal immunoglobulin class G level" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_pig synonym: "Decreased Serum Level of Immunoglobulin G" EXACT [] is_a: MT:0002490 ! circulating immunoglobulin concentration [Term] id: MT:0001819 name: immune cell physiology namespace: Trait.ontology def: "abnormal function of the cells of the immune system" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_pig synonym: "immune cell dysfunction" EXACT [] is_a: MT:0001790 ! immune system physiology [Term] id: MT:0001845 name: inflammatory response namespace: Trait.ontology def: "aberrant reaction of the microcirculation characterized by movement of fluid and leukocytes from the blood into extravascular tissues" [Pathology:ISBN 0-397-51047-0] subset: slim_pig synonym: "inflammation" EXACT [] synonym: "inflammatory response" EXACT [] is_a: MT:0001790 ! immune system physiology [Term] id: MT:0001846 name: tissue specific inflammatory response namespace: Trait.ontology def: "greater than expected response to injury, infection, or insult" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_pig is_a: MT:0001845 ! inflammatory response [Term] id: MT:0001866 name: nasal inflammation namespace: Trait.ontology def: "local accumulation of fluid, plasma proteins, and leukocytes in the proximal portion of the respiratory passages" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Immunobiology_The Immune System in Health and Disease:ISBN 0-8153-1691-7] subset: slim_pig is_a: MT:0002405 ! respiratory system inflammation [Term] id: MT:0001867 name: rhinitis namespace: Trait.ontology alt_id: MT:0001113 def: "inflammation of the mucous membrane of the nose" [J:60896, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8, tc:Teresa Chu_Mouse Genome Informatics Curator] subset: slim_pig synonym: "nasal catarrh" EXACT [] is_a: MT:0001866 ! nasal inflammation is_a: MT:0002238 ! nasal mucosa morphology [Term] id: MT:0001881 name: mammary gland physiology namespace: Trait.ontology def: "aberrant function of the milk-secreting gland that lies within the breast" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_pig synonym: "abnormal mammary gland function" EXACT [] synonym: "mammary gland abnormalities" EXACT [] is_a: MT:0002164 ! gland physiology is_a: MT:0003699 ! female reproductive system physiology [Term] id: MT:0001882 name: lactation namespace: Trait.ontology alt_id: MT:0001383 def: "atypical production of milk from the mammary gland" [J:51296] subset: slim_cattle subset: slim_pig synonym: "lactation abnormalities" EXACT [] synonym: "lactation defects" EXACT [] is_a: MT:0001881 ! mammary gland physiology [Term] id: MT:0001919 name: reproductive system physiology namespace: Trait.ontology def: "anomaly in the function of the organs associated with producing offspring" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "reproductive system physiology anomalies" EXACT [] is_a: MT:0005389 ! reproductive system trait [Term] id: MT:0001921 name: fertility namespace: Trait.ontology alt_id: MT:0001372 def: "diminished ability to produce live offspring" [J:65030] subset: slim_cattle subset: slim_pig synonym: "decreased fecundity" EXACT [] synonym: "semi-sterile" EXACT [] synonym: "semisterile" EXACT [] is_a: MT:0002161 ! fertility/fecundity [Term] id: MT:0001927 name: oestrous cycle (sensu Rodentia) namespace: Trait.ontology def: "failure of or aberrant timing of the sexual cycle of female animals" [J:34193, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_cattle subset: slim_pig synonym: "abnormal estrous cycle" EXACT [] synonym: "abnormal estrus cycle" EXACT [] is_a: MT:0003699 ! female reproductive system physiology [Term] id: MT:0001928 name: ovulation namespace: Trait.ontology def: "aberration in the release of an ovum from a rupturing Graafian follicle, normally regulated by a surge in luteinizing hormone" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_pig is_a: MT:0001927 ! oestrous cycle (sensu Rodentia) [Term] id: MT:0001929 name: gametogenesis namespace: Trait.ontology def: "defective formation or differentiation of germ cells" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator, J:42324, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0002160 ! reproductive system morphology [Term] id: MT:0001937 name: sexual maturation namespace: Trait.ontology def: "a delay or a block in the development of the sexual organs at a given age" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0002212 ! secondary sex determination [Term] id: MT:0002060 name: skin morphology namespace: Trait.ontology def: "malformation or atypical structure of the membranous protective covering of the body" [J:56777, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_chkn subset: slim_pig synonym: "abnormal cutis" EXACT [] synonym: "abnormal skin anatomy" EXACT [] is_a: MT:0002096 ! skin condition/ morphology [Term] id: MT:0002063 name: learning/memory/conditioning namespace: Trait.ontology subset: slim_pig xref: MGI:2173568 is_a: MT:0005386 ! behavior/neurological trait [Term] id: MT:0002066 name: motor capabilities/coordination/movement namespace: Trait.ontology subset: slim_pig xref: MGI:2173571 is_a: MT:0005386 ! behavior/neurological trait [Term] id: MT:0002069 name: eating/drinking behavior namespace: Trait.ontology comment: pslim term subset: slim_cattle subset: slim_chkn subset: slim_pig xref: MGI:2173574 is_a: MT:0005386 ! behavior/neurological trait [Term] id: MT:0002073 name: hair growth namespace: Trait.ontology alt_id: MT:0000409 def: "absence or reduced amount of hair or abnormal onset of hair growth cycle or development" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] comment: pslim term subset: slim_pig synonym: "coat: hair growth defects" EXACT [] synonym: "hair growth abnormalities" EXACT [] xref: MGI:2173539 is_a: MT:0000367 ! coat/ hair morphology [Term] id: MT:0002075 name: coat color namespace: Trait.ontology alt_id: MT:0000368 def: "irregular or unusual pigmentation of the hair in relation to control animals" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] comment: pslim term subset: slim_cattle subset: slim_pig synonym: "coat: color anomalies" EXACT [] xref: MGI:2173541 is_a: MT:0000367 ! coat/ hair morphology is_a: MT:0001186 ! pigmentation trait [Term] id: MT:0002078 name: glucose homeostasis namespace: Trait.ontology def: "anomaly in the state of equilibrium or processing in the body with respect to glucose in the fluids and tissues" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] subset: slim_chkn subset: slim_pig synonym: "abnormal glucose metabolism" EXACT [] synonym: "metabolism: abnormal glucose homeostasis" EXACT [] xref: MGI:2173579 is_a: MT:0001764 ! homeostasis [Term] id: MT:0002089 name: postnatal growth/weight/body size namespace: Trait.ontology alt_id: MT:0001252 def: "increased or decreased average body size, weight or growth characteristic abnormalities manifesting after birth" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] comment: phenoslim term subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "abnormal trunk/ body shape" EXACT [] synonym: "growth/weight/body size abnormality: postnatal" EXACT [] synonym: "trunk/ body shape abnormalities" EXACT [] xref: GO:0040007 xref: GO:0040014 xref: MGI:2173534 is_a: MT:0005378 ! growth/size trait [Term] id: MT:0002096 name: skin condition/ morphology namespace: Trait.ontology alt_id: MT:0001185 def: "malformed or atypical condition of the skin" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] comment: pslim term subset: slim_chkn subset: slim_pig synonym: "abnormal skin" EXACT [] synonym: "skin abnormalities" EXACT [] synonym: "skin: texture/condition anomalies" EXACT [] xref: MGI:2173545 is_a: MT:0005393 ! skin/coat/nails/feathers trait [Term] id: MT:0002106 name: muscle physiology namespace: Trait.ontology alt_id: MT:0002105 def: "anomalous function of the muscle, not due to an anatomical defect" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] comment: former pslim term subset: slim_chkn subset: slim_pig synonym: "muscle physiology abnormalities" EXACT [] synonym: "musculature: physiological defects" EXACT [] xref: MGI:2173559 is_a: MT:0005369 ! muscle trait [Term] id: MT:0002108 name: muscle morphology namespace: Trait.ontology alt_id: MT:0000728 alt_id: MT:0000758 def: "abnormal development of muscle tissue resulting in morphological abnormality" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] comment: pslim term subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "abnormal muscle" EXACT [] synonym: "abnormal musculature" EXACT [] synonym: "muscle abnormalities" EXACT [] synonym: "musculature abnormalities" EXACT [] synonym: "musculature: muscle dysmorphology" EXACT [] xref: MGI:2173558 is_a: MT:0005369 ! muscle trait [Term] id: MT:0002109 name: limb morphology namespace: Trait.ontology alt_id: MT:0000546 def: "form, structure, or number of limbs" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] comment: pslim term subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "abnormal limb" EXACT [] synonym: "extremities: limb dysmorphology" EXACT [] synonym: "limb abnormalities" EXACT [] xref: MGI:2173549 is_a: MT:0000545 ! limbs/digits/tail morphology [Term] id: MT:0002114 name: axial skeleton morphology namespace: Trait.ontology def: "abnormal development of vertebral, spinal or sternal bones resulting in morphological abnormality" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] comment: pslim term subset: slim_cattle subset: slim_pig synonym: "skeletal: axial defects" EXACT [] xref: MGI:2173562 is_a: MT:0005508 ! skeleton morphology [Term] id: MT:0002115 name: skeleton extremities morphology namespace: Trait.ontology def: "abnormal development of limb, foot or tail bones resulting in morphological abnormality" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] comment: pslim term subset: slim_chkn subset: slim_pig synonym: "skeletal: extremities defects" EXACT [] xref: MGI:2173563 is_a: MT:0000545 ! limbs/digits/tail morphology is_a: MT:0005508 ! skeleton morphology [Term] id: MT:0002118 name: lipid homeostasis namespace: Trait.ontology def: "anomaly in the state of equilibrium in the body with respect to lipids in the fluids and tissues" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "metabolism: abnormal lipid homeostasis" EXACT [] xref: MGI:2173578 is_a: MT:0001764 ! homeostasis [Term] id: MT:0002121 name: metabolism namespace: Trait.ontology alt_id: MT:0002120 def: "altered chemical and physical processes of the body or of a tissue, not due to lipid or glucose chemistry" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] subset: slim_chkn subset: slim_pig synonym: "metabolism: other metabolic defect" EXACT [] synonym: "metabolism: other metabolic defect measured by clinical chemistry" EXACT [] xref: MGI:2173580 xref: MGI:2173581 is_a: MT:0005376 ! homeostasis/metabolism trait [Term] id: MT:0002123 name: hematopoiesis namespace: Trait.ontology alt_id: MT:0000236 alt_id: MT:0000241 alt_id: MT:0001600 alt_id: MT:0001604 alt_id: MT:0001605 alt_id: MT:0002402 def: "abnormal development of the enucleated fetal and adult erythrocytes that develop in the aorta, genital ridge and mesonephros region and later in the fetal and adult liver" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] comment: pslim term subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "abnormal blood development" EXACT [] synonym: "abnormal definitive hematopoiesis" EXACT [] synonym: "abnormal hematogenesis" EXACT [] synonym: "abnormal hematosis" EXACT [] synonym: "abnormal hemogenesis" EXACT [] synonym: "abnormal hemopoiesis" EXACT [] synonym: "abnormal sanguification" EXACT [] synonym: "blood development abnormalities" EXACT [] synonym: "deregulated hematopoiesis" EXACT [] synonym: "hematology: hematopoietic anomalies" EXACT [] synonym: "hematopoiesis abnormalities" EXACT [] synonym: "myeloid stem cell abnormalities" EXACT [] xref: MGI:2173583 is_a: MT:0002429 ! blood cell morphology/development [Term] id: MT:0002127 name: cardiovascular system morphology namespace: Trait.ontology alt_id: MT:0000177 def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the heart or vasculature" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] subset: slim_chkn subset: slim_pig relationship: part_of MT:0005385 ! cardiovascular system trait [Term] id: MT:0002132 name: respiratory system morphology namespace: Trait.ontology alt_id: MT:0001174 def: "anomalous structure of pulmonary tissues" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] comment: pslim term subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "respiratory system abnormalities" EXACT [] synonym: "respiratory system: dysmorphology" EXACT [] xref: MGI:2173592 is_a: MT:0005388 ! respiratory system trait [Term] id: MT:0002133 name: respiratory system physiology namespace: Trait.ontology def: "anomalous function of the pulmonary system; inability or reduced ability to intake and exchange oxygen and carbon dioxide with the environment" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] comment: pslim term subset: slim_pig synonym: "abnormal respiratory function" EXACT [] synonym: "respiratory system dysfunction" EXACT [] synonym: "respiratory system physiology abnormalities" EXACT [] synonym: "respiratory system: respiratory distress/failure/functional anomalies" EXACT [] xref: MGI:2173593 is_a: MT:0005388 ! respiratory system trait [Term] id: MT:0002138 name: liver/biliary system morphology namespace: Trait.ontology alt_id: MT:0002172 def: "structural abnormality or aberrant development of any of the tissues of the liver or biliary system" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] comment: pslim term subset: slim_chkn subset: slim_pig synonym: "hepatic system abnormalities" EXACT [] synonym: "hepatic system defects" EXACT [] synonym: "liver/hepatic system: dysmorphology" EXACT [] xref: MGI:2173598 is_a: MT:0005370 ! liver/biliary system trait [Term] id: MT:0002160 name: reproductive system morphology namespace: Trait.ontology alt_id: MT:0001114 alt_id: MT:0001115 def: "structural or developmental anomaly of any of the tissues involved in the reproductive system" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] comment: pslim term subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "abnormal reproductive anatomy" EXACT [] synonym: "abnormal reproductive system" EXACT [] synonym: "reproductive system abnormalities" EXACT [] synonym: "reproductive system defects" EXACT [] synonym: "reproductive system: dysmorphology" EXACT [] xref: MGI:2173620 is_a: MT:0005389 ! reproductive system trait [Term] id: MT:0002161 name: fertility/fecundity namespace: Trait.ontology alt_id: MT:0001920 def: "reduced ability or inability to produce live offspring" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] comment: pslim term subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "abnormal fecundity" EXACT [] synonym: "reproductive system: fertility/fecundity anomalies" EXACT [] xref: MGI:2173621 is_a: MT:0001919 ! reproductive system physiology [Term] id: MT:0002163 name: gland morphology namespace: Trait.ontology alt_id: MT:0000594 def: "abnormal development of any glandular tissue resulting in morphological abnormality" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] comment: pslim term subset: slim_cattle subset: slim_pig synonym: "abnormal glands" EXACT [] synonym: "gland abnormalities" EXACT [] synonym: "glands: dysmorphology" EXACT [] xref: MGI:2173623 is_a: MT:0005379 ! endocrine/exocrine gland trait [Term] id: MT:0002164 name: gland physiology namespace: Trait.ontology alt_id: MT:0001733 alt_id: MT:0001738 alt_id: MT:0002692 def: "altered glandular secretion not due to anatomical defect" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] comment: pslim term subset: slim_cattle subset: slim_pig synonym: "abnormal endocrine gland function" EXACT [] synonym: "abnormal endocrine system physiology" EXACT [] synonym: "abnormal gland function" EXACT [] synonym: "endocrine system physiology abnormalities" EXACT [] synonym: "gland function abnormalities" EXACT [] synonym: "glands: functional anomalies" EXACT [] xref: MGI:2173624 is_a: MT:0005379 ! endocrine/exocrine gland trait [Term] id: MT:0002210 name: sex determination namespace: Trait.ontology alt_id: MT:0001936 def: "anomaly of primary or secondary sexual development or characteristics" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "abnormal reproductive system development" EXACT [] synonym: "abnormal sexual differentiation" EXACT [] is_a: MT:0002160 ! reproductive system morphology [Term] id: MT:0002211 name: primary sex determination namespace: Trait.ontology def: "aberrant gonadal development resulting in either abnormal or absent gonads or the development of gonads inconsistent with the chromosomal sex" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator, llw2:Linda Washburn_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_pig synonym: "abnormal gonad development" EXACT [] is_a: MT:0002210 ! sex determination [Term] id: MT:0002212 name: secondary sex determination namespace: Trait.ontology def: "gonadal development may or may not be normal, and the phenotype of the animal outside the gonad does not match chromosomal sex or is ambiguous" [llw2:Linda Washburn_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0002210 ! sex determination [Term] id: MT:0002233 name: nose morphology namespace: Trait.ontology def: "any structural anomaly of the organ that is specialized for smell and is part of the respiratory system" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings] subset: slim_pig synonym: "abnormal nose" EXACT [] is_a: MT:0002132 ! respiratory system morphology [Term] id: MT:0002238 name: nasal mucosa morphology namespace: Trait.ontology alt_id: MT:0001112 def: "any structural anomaly of the mucous membrane that lines the nasal cavity" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings] subset: slim_pig synonym: "abnormal nasal epithelium" EXACT [] synonym: "abnormal nasal mucosa" EXACT [] synonym: "abnormal nasal mucous membrane" EXACT [] is_a: MT:0002233 ! nose morphology is_a: MT:0002277 ! respiratory mucosa morphology [Term] id: MT:0002269 name: muscle size namespace: Trait.ontology def: "a wasting of muscle tissue resulting in a derangement of the muscle fibers; occurs with age, immobilization, weightlessness, malnutrition or denervation" [cml:Cathleen M. Lutz_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "muscle atrophy" EXACT [] is_a: MT:0002108 ! muscle morphology [Term] id: MT:0002277 name: respiratory mucosa morphology namespace: Trait.ontology def: "structural anomaly of the mucous membrane lining the respiratory tract" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings] subset: slim_pig synonym: "abnormal respiratory mucosa" EXACT [] is_a: MT:0002132 ! respiratory system morphology [Term] id: MT:0002278 name: respiratory muscle morphology namespace: Trait.ontology def: "structural anomaly of any of the muscles involved in breathing" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_pig is_a: MT:0002132 ! respiratory system morphology [Term] id: MT:0002279 name: diaphragm morphology namespace: Trait.ontology alt_id: MT:0000760 def: "structural defect in the thin musculomebranous barrier that separates the abdominal and thoracic cavities; these muscles often used for breathing control" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_pig synonym: "abnormal diaphragm muscle" EXACT [] is_a: MT:0002278 ! respiratory muscle morphology is_a: MT:0003358 ! hypaxial muscle morphology [Term] id: MT:0002292 name: gestational length namespace: Trait.ontology def: "anomaly in the usual duration of time between when a fertilized egg implants in the wall of the uterus and the birth of offspring" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_pig is_a: MT:0003699 ! female reproductive system physiology [Term] id: MT:0002396 name: hematopoietic system morphology/development namespace: Trait.ontology def: "any structural or developmental anomaly of the blood cells or the organs associated with the development and formation of blood cells" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "abnormal blood morphology" EXACT [] synonym: "abnormal hemopoietic system morphology/development" EXACT [] synonym: "hematopoietic organ abnormalities" EXACT [] is_a: MT:0005397 ! hematopoietic system trait [Term] id: MT:0002398 name: bone marrow cell morphology/development namespace: Trait.ontology def: "anomalous structure or formation of the cells found in the bone marrow" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_pig synonym: "bone marrow cell abnormalities" EXACT [] is_a: MT:0002396 ! hematopoietic system morphology/development [Term] id: MT:0002401 name: lymphopoiesis namespace: Trait.ontology alt_id: MT:0000310 alt_id: MT:0001640 alt_id: MT:0001880 def: "atypical formation of lymphocytes and plasma cells from lymphoid stem cells which develop from the pluripotent hematopoietic stem cells in the bone marrow; these lymphoid stem cells differentiate into T-lymphocytes; B-lymphocytes; plasma cells; or NK-cells (natural killer cells), depending on the organ or tissues to which they migrate" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings] subset: slim_pig synonym: "abnormal lymphopoiesis" EXACT [] synonym: "lymphoid stem cell abnormalities" EXACT [] synonym: "lymphopoiesis abnormalities" EXACT [] is_a: MT:0005460 ! leukopoiesis [Term] id: MT:0002405 name: respiratory system inflammation namespace: Trait.ontology def: "local accumulation of fluid, plasma proteins, and leukocytes in the respiratory system" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Immunobiology_The Immune System in Health and Disease:ISBN 0-8153-1691-7] subset: slim_pig is_a: MT:0001846 ! tissue specific inflammatory response is_a: MT:0002133 ! respiratory system physiology [Term] id: MT:0002410 name: susceptibility to viral infection namespace: Trait.ontology def: "reduced likelihood that an organism will develop ill effects from a viral infection or from components of or toxins produced by a virus" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_pig synonym: "increased resistance to viral infection" EXACT [] is_a: MT:0001793 ! susceptibility to infection [Term] id: MT:0002411 name: susceptibility to bacterial infection namespace: Trait.ontology def: "reduced likelihood that an organism will develop ill effects from a bacterial infection or from components of or toxins produced by bacteria" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_pig synonym: "increased resistance to bacterial infection" EXACT [] is_a: MT:0001793 ! susceptibility to infection [Term] id: MT:0002414 name: myeloblast morphology/development namespace: Trait.ontology def: "anomalous structure, formation, or numbers of the cells found in the bone marrow that give rise to the granulocyte line of blood cells" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_pig synonym: "myeloblast abnormalities" EXACT [] is_a: MT:0002398 ! bone marrow cell morphology/development [Term] id: MT:0002415 name: neutrophil morphology/development namespace: Trait.ontology def: "anomalous structure, differentiation, or number of the granular leukocytes that have a three- to five-lobed nucleus and a cytoplasm that contains inconspicuous granules stainable by neutral dyes" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings] subset: slim_pig synonym: "neutrophil abnormalities" EXACT [] is_a: MT:0002414 ! myeloblast morphology/development is_a: MT:0002441 ! granulocyte morphology/development [Term] id: MT:0002420 name: adaptive immunity namespace: Trait.ontology def: "anomaly in the function of the response of antigen-specific lymphocytes to antigen, including the development of immunological memory" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Immunobiology_The Immune System in Health and Disease:ISBN 0-8153-1691-7] subset: slim_pig synonym: "acquired immune response dysfunction" EXACT [] synonym: "adaptive immunity dysfunction" EXACT [] is_a: MT:0001790 ! immune system physiology [Term] id: MT:0002421 name: cell-mediated immunity namespace: Trait.ontology def: "abnormal function of any adaptive immune response in which T cells play a main role" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Immunobiology_The Immune System in Health and Disease:ISBN 0-8153-1691-7] comment: this encompasses all adaptive immunity that cannot be transferred to a naive recipient with serum antibody (the definition of humoral immunity) subset: slim_pig synonym: "cell-mediated immunity dysfunction" EXACT [] is_a: MT:0002420 ! adaptive immunity [Term] id: MT:0002429 name: blood cell morphology/development namespace: Trait.ontology alt_id: MT:0000178 alt_id: MT:0000205 alt_id: MT:0001576 alt_id: MT:0002545 def: "anomalous structure, differentiation, or number of any of the cells found in the blood" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "blood cell abnormalities" EXACT [] synonym: "blood cell defects" EXACT [] is_a: MT:0002396 ! hematopoietic system morphology/development [Term] id: MT:0002441 name: granulocyte morphology/development namespace: Trait.ontology def: "anomalous structure, differentiation, or number of leukocytes that have abundant granules in the cytoplasm: basophils, neutrophils, or eosinophils" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings] subset: slim_pig synonym: "granulocyte abnormalities" EXACT [] is_a: MT:0001601 ! myelopoiesis [Term] id: MT:0002442 name: leukocyte physiology namespace: Trait.ontology def: "abnormal function of any of the white blood cells (basophils, eosinophils, neutrophils, lymphocytes, or monocytes)" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_pig synonym: "leukocyte dysfunction" EXACT [] is_a: MT:0001819 ! immune cell physiology is_a: MT:0002420 ! adaptive immunity is_a: MT:0002421 ! cell-mediated immunity [Term] id: MT:0002444 name: T cell physiology namespace: Trait.ontology def: "anomalous response of T lymphocytes" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_pig synonym: "abnormal T cell function" EXACT [] synonym: "abnormal T lymphocyte function" EXACT [] synonym: "t lymphocyte dysfunction" EXACT [] synonym: "T-cell dysfunction" EXACT [] is_a: MT:0003945 ! lymphocyte physiology [Term] id: MT:0002445 name: mononuclear leukocyte morphology/development namespace: Trait.ontology def: "anomalous structure, differentiation, or number of either of the mature lymphocytes or monocytes found in the blood" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_pig synonym: "mononuclear leukocyte abnormalities" EXACT [] is_a: MT:0002414 ! myeloblast morphology/development is_a: MT:0005460 ! leukopoiesis [Term] id: MT:0002449 name: immune cell development namespace: Trait.ontology def: "atypical formation of the cells of the immune system" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_pig synonym: "immune cell developmental abnormalities" EXACT [] is_a: MT:0000716 ! immune system cell morphology [Term] id: MT:0002459 name: B cell physiology namespace: Trait.ontology def: "abnormal function of B lymphocytes" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_pig synonym: "B cell dysfunction" EXACT [] synonym: "B lymphocyte dysfunction" EXACT [] synonym: "B lymphocyte functional anomalies" EXACT [] synonym: "B-cell dysfunction" EXACT [] is_a: MT:0003945 ! lymphocyte physiology [Term] id: MT:0002490 name: circulating immunoglobulin concentration namespace: Trait.ontology alt_id: MT:0001810 def: "deviation from the normal levels of glycoproteins present in the blood and other tissue, often functioning as antibodies" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_pig synonym: "abnormal immunoglobulin concentration" EXACT [] synonym: "abnormal serum immunoglobulin concentration" EXACT [] synonym: "Abnormal Serum Level of Immunoglobulin" EXACT [] is_a: MT:0001800 ! humoral immune response is_a: MT:0002459 ! B cell physiology is_a: MT:0002723 ! immune serum protein physiology [Term] id: MT:0002501 name: inflammatory mediator physiology namespace: Trait.ontology def: "functional anomaly of any of the endogenous compounds that mediate the local accumulation of fluid, plasma proteins, and leukocytes at the site of injury, insult, or infection" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Immunobiology_The Immune System in Health and Disease:ISBN 0-8153-1691-7] subset: slim_pig synonym: "inflammatory mediators" EXACT [] is_a: MT:0001845 ! inflammatory response is_a: MT:0002723 ! immune serum protein physiology [Term] id: MT:0002529 name: interleukin physiology namespace: Trait.ontology def: "functional anomaly of any of the cytokines produced by leukocytes" [Immunobiology_The Immune System in Health and Disease:ISBN 0-8153-1691-7] subset: slim_pig synonym: "abnormal lymphokines physiology" EXACT [] is_a: MT:0005049 ! cytokine physiology [Term] id: MT:0002572 name: emotion/affect behavior namespace: Trait.ontology subset: slim_chkn subset: slim_pig is_a: MT:0005386 ! behavior/neurological trait [Term] id: MT:0002619 name: lymphocyte morphology/development namespace: Trait.ontology alt_id: MT:0005063 def: "anomalous structure, differentiation, or number of the white blood cells formed in the body's lymphoid tissue" [MeSH:National Library of Medicine_Medical Subject Headings] subset: slim_pig synonym: "lymphocyte abnormalities" EXACT [] synonym: "lymphocyte structural abnormalities" EXACT [] is_a: MT:0002445 ! mononuclear leukocyte morphology/development [Term] id: MT:0002637 name: uterus size namespace: Trait.ontology def: "reduced size of the female muscular organ of gestation" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] subset: slim_pig is_a: MT:0001120 ! uterus morphology [Term] id: MT:0002664 name: circulating adrenocorticotropin level namespace: Trait.ontology def: "decreased concentration in the blood of the pituitary hormone that stimulates the secretion of adrenal cortical steroids and induces growth of the adrenal cortex" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_pig synonym: "circulating adrenocorticotropic hormone level" EXACT [] synonym: "decreased serum levels of ACTH" EXACT [] synonym: "decreased serum levels of adrenocorticotropin" EXACT [] is_a: MT:0003966 ! adrenocorticotropin level is_a: MT:0005116 ! circulating pituitary hormone level [Term] id: MT:0002669 name: scrotum morphology namespace: Trait.ontology def: "malformation of the external sac of skin that encloses the testes" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_cattle subset: slim_pig is_a: MT:0001145 ! male reproductive anatomy [Term] id: MT:0002679 name: corpora lutea morphology namespace: Trait.ontology def: "malformed or absent yellow endocrine body formed in the ovary after follicle rupture" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] subset: slim_pig synonym: "abnormal corpus luteum" EXACT [] is_a: MT:0003356 ! luteinization [Term] id: MT:0002680 name: number of corpora lutea namespace: Trait.ontology def: "fewer than normal numbers of yellow endocrine body formed in the ovary after follicle rupture in a given oestrous cycle" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] subset: slim_pig is_a: MT:0002679 ! corpora lutea morphology [Term] id: MT:0002683 name: onset of fertility namespace: Trait.ontology def: "age at which animals develop the ability to produce live offspring" [llw2:Linda Washburn_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "age at first breeding" NARROW [] synonym: "age at first egg" NARROW [] synonym: "age at puberty" EXACT [] synonym: "age at sexual maturity" EXACT [] is_a: MT:0001937 ! sexual maturation is_a: MT:0002161 ! fertility/fecundity [Term] id: MT:0002723 name: immune serum protein physiology namespace: Trait.ontology def: "abnormal concentration or function of circulating immune proteins" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_pig synonym: "immune system: serum protein abnormalities" EXACT [] is_a: MT:0001790 ! immune system physiology [Term] id: MT:0002773 name: circulating luteinizing hormone level namespace: Trait.ontology def: "lower than normal levels in the bloodstream of LH, the hormone that regulates steroid production by the interstitial cells of the testis and the ovary" [J:35132, MeSH:National Library of Medicine_Medical Subject Headings, pvb:Pierre Vanden Borre_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "decreased serum levels of LH" EXACT [] synonym: "decreased serum levels of luteinizing hormone" EXACT [] synonym: "decreased serum levels of lutropin" EXACT [] is_a: MT:0003361 ! circulating gonadotropin level is_a: MT:0003969 ! luteinizing hormone level is_a: MT:0005116 ! circulating pituitary hormone level [Term] id: MT:0002790 name: circulating follicle stimulating hormone level namespace: Trait.ontology def: "less than expected blood concentration of the hormone that, in females, stimulates the graafian follicles of the ovary and assists in follicular maturation and the secretion of estradiol; in the male it stimulates the epithelium of the seminiferous tubules and is partly responsible for spermatogenesis" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "decreased serum levels of follicle stimulating hormone" EXACT [] synonym: "decreased serum levels of follitropin" EXACT [] synonym: "decreased serum levels of FSH" EXACT [] synonym: "decreased serum levels of gametokinetic hormone" EXACT [] is_a: MT:0003361 ! circulating gonadotropin level is_a: MT:0003967 ! follicle stimulating hormone level is_a: MT:0005116 ! circulating pituitary hormone level [Term] id: MT:0002907 name: parturition namespace: Trait.ontology def: "defect in the process of labor and delivery in female animals" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_cattle subset: slim_pig is_a: MT:0003699 ! female reproductive system physiology [Term] id: MT:0002932 name: joint morphology namespace: Trait.ontology def: "defect in the articulation point of two or more bones" [MeSH:National Library of Medicine_Medical Subject Headings, RGD:Rat Genome Database submission] subset: slim_pig is_a: MT:0005508 ! skeleton morphology [Term] id: MT:0002936 name: joint swelling namespace: Trait.ontology def: "enlargement of the joints, usually due to an accumulation of fluid" [RGD:Rat Genome Database submission] subset: slim_pig is_a: MT:0002932 ! joint morphology [Term] id: MT:0002970 name: white fat morphology namespace: Trait.ontology subset: slim_cattle subset: slim_pig is_a: MT:0000003 ! adipose tissue morphology [Term] id: MT:0003047 name: thoracic vertebrae morphology namespace: Trait.ontology def: "malformation of any or all of the thirteen bony segments of the spine located anterior to the lumbar vertebrae and posterior to the cervical vertebrae" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings] subset: slim_cattle subset: slim_pig is_a: MT:0000137 ! vertebrae morphology [Term] id: MT:0003049 name: lumbar vertebrae morphology namespace: Trait.ontology def: "malformation of any or all of the six bony segments of the spine located anterior to the sacral vertebrae and posterior to the thoracic vertebrae" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings] subset: slim_cattle subset: slim_pig is_a: MT:0000137 ! vertebrae morphology [Term] id: MT:0003072 name: metatarsal bone morphology namespace: Trait.ontology def: "anomaly in the five bones of the hindpaws that articulate proximally with the cuneiform and cuboid bones of the tarsus and distally with the phalanges" [Anatomy of the Rat:Greene EC_Hafner Publishing Co_1935, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_chkn subset: slim_pig is_a: MT:0002115 ! skeleton extremities morphology [Term] id: MT:0003073 name: metacarpal bone morphology namespace: Trait.ontology def: "anomaly in the five bones of the forepaws that articulate proximally with the carpal bones and distally with the phalanges" [Anatomy of the Rat:Greene EC_Hafner Publishing Co_1935, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_pig is_a: MT:0002115 ! skeleton extremities morphology [Term] id: MT:0003084 name: skeletal muscle fiber morphology namespace: Trait.ontology def: "anomalous structure of the skeletal muscle fibers, the large multinucleated cells that make up the skeletal muscles" [smb:Susan M. Bello_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_pig is_a: MT:0000759 ! skeletal muscle morphology is_a: MT:0004087 ! muscle fiber morphology [Term] id: MT:0003107 name: response to novelty namespace: Trait.ontology subset: slim_chkn subset: slim_pig is_a: MT:0002572 ! emotion/affect behavior [Term] id: MT:0003313 name: locomotor activation namespace: Trait.ontology subset: slim_pig is_a: MT:0001392 ! locomotor activity [Term] id: MT:0003356 name: luteinization namespace: Trait.ontology def: "atypical transformation of the mature ovarian follicle and its theca interna into a corpus luteum after ovulation" [anna:Anna V. Anagnostopoulos_Mouse Genome Informatics Curator, J:43075, J:57854] subset: slim_pig is_a: MT:0001126 ! ovary morphology [Term] id: MT:0003358 name: hypaxial muscle morphology namespace: Trait.ontology def: "malformation of the muscles derived from the lateral myotome and lateral portion of the dermomyotome; these include the thoracic intercostal and abdominal muscles, limb muscles and superficial back muscles, as well as the diaphragm and the tip of the tongue" [PMID:1591996] subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "abnormal limb muscle morphology" EXACT [] is_a: MT:0000759 ! skeletal muscle morphology [Term] id: MT:0003361 name: circulating gonadotropin level namespace: Trait.ontology def: "aberrant blood concentration of the peptide hormones that stimulate gonadal functions such as gametogenesis and sex steroid hormone production in the ovary and the testis" [MeSH:National Library of Medicine_Medical Subject Headings] subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0005418 ! circulating hormone level [Term] id: MT:0003366 name: circulating glucocorticoid level namespace: Trait.ontology def: "aberrant blood concentration of the corticosteroids regulating carbohydrate metabolism and exhibiting anti-inflammatory activity" [ncbi:Matthew Mailman_NCBI request, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_chkn subset: slim_pig is_a: MT:0005418 ! circulating hormone level [Term] id: MT:0003398 name: skeletal muscle size namespace: Trait.ontology def: "greater than average dimensions of one or more of the muscles of the skeleton" [J:94134, smb:Susan M. Bello_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0000759 ! skeletal muscle morphology [Term] id: MT:0003399 name: skeletal muscle fiber size namespace: Trait.ontology def: "increase in the size of the large multinucleated cells that make up the skeletal muscles" [J:94134, smb:Susan M. Bello_Mouse Genome Informatics Curator] subset: slim_pig is_a: MT:0003084 ! skeletal muscle fiber morphology [Term] id: MT:0003402 name: liver weight namespace: Trait.ontology def: "reduced average weight of the bile-secreting exocrine gland" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] subset: slim_chkn subset: slim_pig is_a: MT:0000598 ! liver morphology [Term] id: MT:0003491 name: voluntary movement namespace: Trait.ontology subset: slim_pig is_a: MT:0002066 ! motor capabilities/coordination/movement [Term] id: MT:0003699 name: female reproductive system physiology namespace: Trait.ontology def: "anomaly in the function of the female organs associated with producing offspring" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_pig is_a: MT:0001919 ! reproductive system physiology [Term] id: MT:0003723 name: long bone morphology namespace: Trait.ontology def: "malformation of any of the several elongated bones of the extremities" [monikat:Monika Tomczuk_Mouse Genome Informatics Curator] subset: slim_chkn subset: slim_pig is_a: MT:0002115 ! skeleton extremities morphology [Term] id: MT:0003795 name: bone structure namespace: Trait.ontology def: "anomaly in the composite material or the layered arrangement of the bony endoskeleton of the body" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_pig is_a: MT:0005508 ! skeleton morphology [Term] id: MT:0003815 name: hair number namespace: Trait.ontology def: "total number of hairs" [llw2:Linda Washburn_Mouse Genome Informatics Curator] subset: slim_pig synonym: "amount of hair" RELATED [] is_a: MT:0001510 ! coat appearance is_a: MT:0002073 ! hair growth [Term] id: MT:0003945 name: lymphocyte physiology namespace: Trait.ontology def: "abnormal function of any of the white blood cells that includes B cells, T cells, and NK cells" [monikat:Monika Tomczuk_Mouse Genome Informatics Curator] subset: slim_pig is_a: MT:0002442 ! leukocyte physiology [Term] id: MT:0003947 name: cholesterol level namespace: Trait.ontology def: "anomaly in the concentration in the body of these most abundant steroids in animal tissues, and precursors to steroid hormones and bile salts; also components of plasma membranes" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_chkn subset: slim_pig is_a: MT:0001547 ! lipid level is_a: MT:0005278 ! cholesterol homeostasis [Term] id: MT:0003953 name: hormone level namespace: Trait.ontology def: "aberrant tissue or circulating concentration of any substance, usually a peptide or steroid, that has a specific metabolic regulatory effect on the activity or behavior of cells expressing a receptor for the hormone" [MeSH:National Library of Medicine_Medical Subject Headings] subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0001764 ! homeostasis [Term] id: MT:0003956 name: body size namespace: Trait.ontology def: "anomaly in the average body weight, height and/or length of an organism compared to controls" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_pig is_a: MT:0002089 ! postnatal growth/weight/body size [Term] id: MT:0003965 name: pituitary hormone level namespace: Trait.ontology alt_id: MT:0005125 def: "aberration in the blood or tissue concentration of any of the hormones secreted by the pituitary" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0003953 ! hormone level [Term] id: MT:0003966 name: adrenocorticotropin level namespace: Trait.ontology def: "anomalous concentration of the pituitary hormone that stimulates the secretion of adrenal cortical steroids and induces growth of the adrenal cortex" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_pig is_a: MT:0003965 ! pituitary hormone level [Term] id: MT:0003967 name: follicle stimulating hormone level namespace: Trait.ontology def: "anomalous concentration of the hormone that, in females, stimulates the graafian follicles of the ovary and assists in follicular maturation and the secretion of estradiol; in the male it stimulates the epithelium of the seminiferous tubules and is partly responsible for spermatogenesis" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0003965 ! pituitary hormone level [Term] id: MT:0003969 name: luteinizing hormone level namespace: Trait.ontology def: "aberrant levels in the bloodstream of LH, the hormone that regulates steroid production by the interstitial cells of the testis and the ovary" [MeSH:National Library of Medicine_Medical Subject Headings, pvb:Pierre Vanden Borre_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "abnormal LH level" RELATED [] synonym: "abnormal lutropin level" RELATED [] is_a: MT:0003965 ! pituitary hormone level [Term] id: MT:0003971 name: thyroid-stimulating hormone level namespace: Trait.ontology def: "anomalous concentration of the hormone that stimulates the growth and function of the thyroid gland" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_pig is_a: MT:0003965 ! pituitary hormone level [Term] id: MT:0004043 name: pH regulation namespace: Trait.ontology def: "anomaly in the function of the buffer systems of the body in combination with the respiratory and renal systems that control the relative acidity or alkalinity of the body, as measured by the concentration of hydrogen ion" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] subset: slim_pig is_a: MT:0001764 ! homeostasis [Term] id: MT:0004087 name: muscle fiber morphology namespace: Trait.ontology def: "malformed or poorly developed muscle fibers, the cylindrical multinucleated muscle cells that contract when stimulated" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] subset: slim_pig is_a: MT:0002108 ! muscle morphology [Term] id: MT:0004090 name: sarcomere morphology namespace: Trait.ontology def: "any structural abnormality in the segment of a myofibril between two Z lines comprised of multi-protein complexes composed of three different filament systems; these systems work together to contract and relax muscle" [anna:Anna V. Anagnostopoulos_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_pig is_a: MT:0004087 ! muscle fiber morphology [Term] id: MT:0004233 name: muscle weight namespace: Trait.ontology def: "any anomaly in the average muscle weight" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0002269 ! muscle size [Term] id: MT:0004248 name: epaxial muscle morphology namespace: Trait.ontology def: "malformation of the muscles derived from the medial myotome; includes the intrinsic back muscles" [PMID:1591996] subset: slim_cattle subset: slim_pig is_a: MT:0000759 ! skeletal muscle morphology [Term] id: MT:0004271 name: paw/hand/foot/hoof morphology namespace: Trait.ontology def: "malformation of the pedal or prehensile extremity of vertebrates" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_pig synonym: "abnormal paw morphology" EXACT [] synonym: "abnormal paws" EXACT [] synonym: "paw abnormalities" RELATED [] is_a: MT:0002109 ! limb morphology [Term] id: MT:0004392 name: CD8+ T cell physiology namespace: Trait.ontology def: "anomalous response of the subset of T lymphocytes that carry the CD8 marker" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] subset: slim_pig is_a: MT:0002444 ! T cell physiology [Term] id: MT:0005025 name: response to infection namespace: Trait.ontology def: "the body's reaction to invasion and multiplication of microorganisms in its tissues, or the body's reaction to components of or toxins produced by pathogenic microorganisms" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings] subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0001790 ! immune system physiology [Term] id: MT:0005049 name: cytokine physiology namespace: Trait.ontology def: "functional anomaly of any of the non-antibody proteins made by inflammatory leukocytes and some non-leukocytic cells that affect the behavior of other cells" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Immunobiology_The Immune System in Health and Disease:ISBN 0-8153-1691-7] subset: slim_pig is_a: MT:0002501 ! inflammatory mediator physiology [Term] id: MT:0005116 name: circulating pituitary hormone level namespace: Trait.ontology alt_id: MT:0005115 def: "aberration in the blood concentration of any of the hormones secreted by the pituitary" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "abnormal circulating level of pituitary hormone" EXACT [] synonym: "abnormal serum level of pituitary hormone" EXACT [] is_a: MT:0003965 ! pituitary hormone level is_a: MT:0005418 ! circulating hormone level [Term] id: MT:0005119 name: circulating thyroid-stimulating hormone level namespace: Trait.ontology def: "less than expected blood concentration of the hormone that stimulates the growth and function of the thyroid gland" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_pig synonym: "decreased serum levels of thyroid-stimulating hormone" EXACT [] synonym: "decreased serum levels of thyropic hormone" EXACT [] synonym: "decreased serum levels of thyrotrophin" EXACT [] synonym: "decreased serum levels of thyrotropin" EXACT [] synonym: "decreased serum levels of TSH" EXACT [] is_a: MT:0003971 ! thyroid-stimulating hormone level is_a: MT:0005116 ! circulating pituitary hormone level [Term] id: MT:0005278 name: cholesterol homeostasis namespace: Trait.ontology def: "anomaly in the state of equilibrium in the body of these most abundant steroids in animal tissues, and precursors to steroid hormones and bile salts; also components of plasma membranes" [J:71350, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_chkn subset: slim_pig is_a: MT:0002118 ! lipid homeostasis [Term] id: MT:0005280 name: fatty acid level namespace: Trait.ontology def: "anomalous concentration of organic, monobasic acids derived from hydrocarbons and which are complexed with serum albumin for transport; they are saturated and unsaturated" [MeSH:National Library of Medicine_Medical Subject Headings] subset: slim_cattle subset: slim_pig is_a: MT:0001547 ! lipid level relationship: part_of MT:0005666 ! adipose tissue physiology [Term] id: MT:0005285 name: unsaturated fatty acid level namespace: Trait.ontology def: "less than normal non-circulating level of organic, monobasic acids derived from hydrocarbons in which the carbon chain has one or more double or triple carbon-carbon bonds" [MeSH:National Library of Medicine_Medical Subject Headings] subset: slim_pig synonym: "lowered unsaturated fatty acid level" EXACT [] is_a: MT:0005280 ! fatty acid level [Term] id: MT:0005286 name: saturated fatty acid level namespace: Trait.ontology def: "less than normal non-circulating level of organic, monobasic acids derived from hydrocarbons in which the carbon chain contains only single carbon-carbon bonds" [MeSH:National Library of Medicine_Medical Subject Headings] subset: slim_pig synonym: "lowered saturated fatty acid level" EXACT [] is_a: MT:0005280 ! fatty acid level [Term] id: MT:0005319 name: enzyme/ coenzyme level namespace: Trait.ontology def: "altered concentration of any of these proteins, or their cofactors, that act as catalysts to induce chemical changes in other substances" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_chkn subset: slim_pig is_a: MT:0001764 ! homeostasis [Term] id: MT:0005357 name: locomotor activation in a new environment namespace: Trait.ontology subset: slim_pig synonym: "locomotion" RELATED [] is_a: MT:0001413 ! response to new environment is_a: MT:0003313 ! locomotor activation [Term] id: MT:0005369 name: muscle trait namespace: Trait.ontology subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0000001 ! Trait [Term] id: MT:0005370 name: liver/biliary system trait namespace: Trait.ontology subset: slim_chkn subset: slim_pig synonym: "hepatic" EXACT [] is_a: MT:0000001 ! Trait [Term] id: MT:0005371 name: limbs/digits/tail trait namespace: Trait.ontology subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0000001 ! Trait [Term] id: MT:0005372 name: life span/aging trait namespace: Trait.ontology subset: slim_cattle subset: slim_pig synonym: "lifespan" EXACT [] synonym: "survival" EXACT [] synonym: "viability" EXACT [] synonym: "viable" EXACT [] is_a: MT:0000001 ! Trait [Term] id: MT:0005375 name: adipose tissue trait namespace: Trait.ontology subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "fat" EXACT [] is_a: MT:0000001 ! Trait [Term] id: MT:0005376 name: homeostasis/metabolism trait namespace: Trait.ontology subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0000001 ! Trait [Term] id: MT:0005378 name: growth/size trait namespace: Trait.ontology subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0000001 ! Trait [Term] id: MT:0005379 name: endocrine/exocrine gland trait namespace: Trait.ontology subset: slim_cattle subset: slim_pig is_a: MT:0000001 ! Trait [Term] id: MT:0005381 name: digestive/alimentary trait namespace: Trait.ontology subset: slim_chkn subset: slim_pig synonym: "gastrointestinal" EXACT [] is_a: MT:0000001 ! Trait [Term] id: MT:0005382 name: craniofacial trait namespace: Trait.ontology subset: slim_pig is_a: MT:0000001 ! Trait [Term] id: MT:0005385 name: cardiovascular system trait namespace: Trait.ontology def: "any measurable or observable characterisitic of the heart and/or vasculature" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] subset: slim_chkn subset: slim_pig synonym: "cardiac" EXACT [] synonym: "circulatory" EXACT [] synonym: "heart" EXACT [] is_a: MT:0000001 ! Trait [Term] id: MT:0005386 name: behavior/neurological trait namespace: Trait.ontology alt_id: MT:0001350 subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0000001 ! Trait [Term] id: MT:0005387 name: immune system trait namespace: Trait.ontology subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0000001 ! Trait [Term] id: MT:0005388 name: respiratory system trait namespace: Trait.ontology subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "lung" EXACT [] synonym: "pulmonary" EXACT [] is_a: MT:0000001 ! Trait [Term] id: MT:0005389 name: reproductive system trait namespace: Trait.ontology subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "reproduction" EXACT [] is_a: MT:0000001 ! Trait [Term] id: MT:0005390 name: skeleton trait namespace: Trait.ontology subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "bone" EXACT [] is_a: MT:0000001 ! Trait [Term] id: MT:0005393 name: skin/coat/nails/feathers trait namespace: Trait.ontology subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0000001 ! Trait [Term] id: MT:0005395 name: other trait namespace: Trait.ontology subset: slim_cattle subset: slim_pig is_a: MT:0000001 ! Trait [Term] id: MT:0005397 name: hematopoietic system trait namespace: Trait.ontology subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "hemopoietic system phenotype" EXACT [] is_a: MT:0000001 ! Trait [Term] id: MT:0005406 name: heart size namespace: Trait.ontology def: "the physical dimensions, proportions, magnitude, or extent of the cardiac muscle or any of its component structures" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] subset: slim_chkn subset: slim_pig synonym: "cardiac size" RELATED [] relationship: part_of MT:0000266 ! cardiac morphology [Term] id: MT:0005416 name: circulating protein level namespace: Trait.ontology def: "anomalous blood concentration of any of the macromolecules consisting of long chains of amino acids in peptide linkage" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_chkn subset: slim_pig synonym: "abnormal protein level" EXACT [] is_a: MT:0000179 ! blood chemistry [Term] id: MT:0005418 name: circulating hormone level namespace: Trait.ontology def: "anomalous blood concentration of any of the chemical substances that have specific regulatory effects on the activity of a certain organ or organs; originally applied to substances secreted by various endocrine glands and transported in the bloodstream to the target organs, it is sometimes extended to include substances that are not produced by the endocrine glands but that have similar effects" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings] subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0000179 ! blood chemistry is_a: MT:0003953 ! hormone level [Term] id: MT:0005428 name: clinical chemistry namespace: Trait.ontology def: "any anomaly in the laboratory tests that show the presence of physiologically significant substances in the blood, urine, tissue, and body fluids with application to the diagnosis or therapy of disease" [MeSH:National Library of Medicine_Medical Subject Headings] subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0001764 ! homeostasis [Term] id: MT:0005437 name: glycogen level namespace: Trait.ontology def: "anomalous concentration of this readily converted carbohydrate reserve, found in most tissues of the body, especially liver and muscle" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_pig relationship: part_of ID:0000694 ! muscle glycogen homeostasis relationship: part_of MT:0005438 ! glycogen homeostasis [Term] id: MT:0005438 name: glycogen homeostasis namespace: Trait.ontology def: "abnormal processing and or utilization of this readily converted carbohydrate reserve, found in most tissues of the body, especially liver and muscle" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_pig is_a: MT:0002078 ! glucose homeostasis [Term] id: MT:0005449 name: food intake namespace: Trait.ontology subset: slim_cattle subset: slim_pig synonym: "feed consumption" EXACT [] synonym: "food consumption" EXACT [] is_a: MT:0001431 ! eating behavior [Term] id: MT:0005451 name: body composition namespace: Trait.ontology def: "anomalous relative amounts of various components of the body, such as percent body fat" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings] subset: slim_pig is_a: MT:0001764 ! homeostasis [Term] id: MT:0005452 name: body fat amount namespace: Trait.ontology subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: MT:0000003 ! adipose tissue morphology [Term] id: MT:0005456 name: weight gain namespace: Trait.ontology def: "number of excess calories needed to increase body weight by a specified amount" [MeSH:National Library of Medicine_Medical Subject Headings] subset: slim_cattle subset: slim_pig is_a: MT:0001259 ! body weight [Term] id: MT:0005460 name: leukopoiesis namespace: Trait.ontology alt_id: MT:0002430 def: "anomalous process of generating white blood cells (leukocytes) from the pluripotent hematopoietic stem cells of the bone marrow; two significant pathways generate various types of leukocytes: myelopoiesis, in which leukocytes in the blood are derived from myeloid stem cells, and lymphopoiesis, in which leukocytes of the lymphatic system (lymphocytes) are generated from lymphoid stem cells" [MeSH:National Library of Medicine_Medical Subject Headings] subset: slim_pig synonym: "abnormal leukocyte morphology/development" EXACT [] synonym: "leukocyte abnormalities" EXACT [] synonym: "white blood cell abnormalities" EXACT [] is_a: MT:0002123 ! hematopoiesis is_a: MT:0002449 ! immune cell development [Term] id: MT:0005463 name: CD4+ T cell physiology namespace: Trait.ontology def: "anomalous response of the subset of T lymphocytes that carry the CD4 marker, recognize intravesicular peptides bound to MHC class-II molecules, and turn on antibody production" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator] subset: slim_pig synonym: "abnormal CD4+ T cell function" EXACT [] synonym: "CD4+ T cell dysfunction" EXACT [] is_a: MT:0002444 ! T cell physiology [Term] id: MT:0005508 name: skeleton morphology namespace: Trait.ontology alt_id: MT:0000055 def: "malformation of the bony framework of the body in vertebrates" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_cattle subset: slim_chkn subset: slim_pig synonym: "abnormal bone/ skeleton" EXACT [] synonym: "bone/ skeletal abnormalities" EXACT [] is_a: MT:0005390 ! skeleton trait [Term] id: MT:0005535 name: body temperature namespace: Trait.ontology def: "deviation in the level of heat natural to a living being" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, RGD:Rat Genome Database submission, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] subset: slim_pig is_a: MT:0001764 ! homeostasis [Term] id: MT:0005666 name: adipose tissue physiology namespace: Trait.ontology subset: slim_cattle subset: slim_pig is_a: MT:0005375 ! adipose tissue trait [Term] id: MT:0006078 name: nipple morphology namespace: Trait.ontology def: "malformation of the erectile protuberance at the tip of the mammary gland" [J:92627, smb:Susan M. Bello_Mouse Genome Informatics Curator, Taber's Cyclopedic Medical Dictionary_19th edition:ISBN N 0-8036-0655-99] subset: slim_cattle subset: slim_pig synonym: "teat morphology" EXACT [] is_a: MT:0000627 ! mammary gland morphology [Term] id: MT:0006087 name: body mass index namespace: Trait.ontology def: "greater than normal average of a measure of weight for height" [ncbi:Matthew Mailman_NCBI request, smb:Susan M. Bello_Mouse Genome Informatics Curator] subset: slim_pig synonym: "increased BMI" EXACT [] is_a: MT:0001259 ! body weight [Term] id: MT:0007028 name: heart weight namespace: Trait.ontology def: "mass of the heart times gravity" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] subset: slim_chkn subset: slim_pig synonym: "cardiac weight" RELATED [] is_a: MT:0005406 ! heart size [Typedef] id: is_a name: is a namespace: Trait.ontology subset: slim_cattle subset: slim_chkn subset: slim_pig [Typedef] id: part_of name: part_of namespace: Trait.ontology subset: slim_cattle subset: slim_chkn subset: slim_pig is_transitive: true