USDA NRSP8 Program: Animal Genomics for Animal Industries

Genome Informatics Resources

Animal Genome Data Resources

Maps: [ NCBI (Cattle, Chicken, Horse, Pig, Sheep); Ensembl (Cattle, Chicken, Horse, Pig, Sheep); ARKDB (Chick, Cow, Horse, Pig, Salmon, Sheep, Turkey); INRA (Cattle, Pigs); RH (Cattle, Pigs, Chicken, Sheep) ]
QTL: [ Cattle, Pig, Chicken, Goat, Horse, Sheep ]
SNP Chips: Cattle | Pig | Sheep | SNPchimp
HapMap: Cattle | Pig | Sheep
Genomes: Chicken, Cattle, Pigs, Sheep, Horse
NAGRP Data Repository: for all livestock species

Community Activities

Updates: NRSP8 Bioinformatics Reports
Events: Conferences, Meetings & Workshops
News: Google | NCBI | USDA
AnGenMap: Animal Genomics Discussion Group
Directory: Extended AnGenMap Members
NRSP8: USDA-NIFA | The Community
Interest Groups: Web sites and communications

Neighborhoods

Ontology: GO | MPO | SO | OBO | BioOntology
Functional genomics: BioGPS | ExPASy | GeneCards | HGNC | VGNC | MIBBI | KEGG | Reactom | IONH pathways | DGIL Porcine Translational DB | FAANG Mine
Phenotypes:: Monarch Initiative

AG2PI
Interest groups: AgBioData | farmGTEX | FAANG

NAGRP Endeavors

Services: ( CorrDB | QTLdb | JBrowse )
Service developments: Databases and Web Sites
[ Data Repository ] [ Tools Repository ]
ToolBox | NAGRP Data Sharing Platform
Ontologies ( VT | LPT | CMO | LBO | VBO )
An introductory list of animal genomics software

Projects and Publications

Projects: The Past, the Current, and the Potentials
Publications: Abstracts and Papers

Knowledgebase Pool

Highlighted: Manuals / Tutorials / File Formats
Glossaries: Animal Genetics | Genomics | New Terms

© 2003-2024: USA · USDA · NRPSP8 · Program to Accelerate Animal Genomics Applications. Contact: Bioinformatics Team