BRIEF DESCRIPTION
	Files within this directory are summaries from ANEXdb, a software application that stores both Affymetrix expression and sequence annotation data.

PUBLICATION
	...

DOWNLOAD
	To download ANEXdb for a local install go to http://sourceforge.net/projects/anexdb/

Availalbe Files
	Affy_porcine_Annotation-NX.xls
		Annotation summary of Affymetrix Porcine GeneChip(R).  Contains a summary page, as well as broken apart into various species.  Based on top BLASTN alignment of the Affymetrix target sequence to the IPA, then the top BLASTN hit of the sequence from the IPA to NCBI's RefSeq. 
		Fields:
		Affy ID	-> corresponding Affymetrix probe set ID
		IPA ID	-> corresponding Iowa Porcine Assembly ID
			ITC  -> built consensus sequnce
			else -> singleton
		RefSeq ID -> NCBI RefSeq accession number
		RefSeq Desc -> NCBI RefSeq description
		Gene ID -> NCBI Gene ID for the RefSeq
		Gene Sym -> Official Gene Symbol for the Gene ID
		Tax -> NCBI Taxonomy accession number for Gene ID
		A2I Score -> BLASTN score from Affymetrix target squence querying IPA
		A2I Evalue -> BLASTN E-value from Affymetrix target squence querying IPA
		I2R Score -> BLASTN score from IPA querying RefSeq
		I2R Evalue -> BLASTN E-value from IPA querying RefSeq

	ipa_v1.fa
		FASTA file of Iowa Porcine Assembly (version 1).  Includes both contigs and singlets

	ipa_annotation_v1.txt
		Tab deliminted annotation summary of the Iowa Porcine Assembly (IPA, version 1) based on top BLASTN alignment to NCBI RefSeq.
		Query -> Either contig or singlet from the IPA
		Hit -> Top BLASTN hit from NCBI RefSeq
		Hit Desc -> Description of top hit
		Score -> BLASTN score
		E-value -> BLASTN E-value
		Gene ID -> NCBI Gene ID of top hit
		Gene Sym -> Gene symobol of top hit
		GO -> List of associated GO terms for top hit
		KEGG -> List of associated KEGG pathways for associated top hit

	SscReptitive
		FASTA file of porcine specific repeated sequences.