Authors: Zhou Y, Connor EE, Wiggans GR1, Lu Y, Tempelman RJ, Schroeder SG, Chen H, Liu GE
(Contact: george.liu@ars.usda.gov ) Affiliation: Animal Genomics and Improvement Laboratory, BARC, USDA-ARS, 10300 Baltimore Avenue, Bldg. 306, BARC-East, Beltsville, MD, 20705, USA Title: Genome-wide copy number variant analysis reveals variants associated with 10 diverse production traits in Holstein cattle Journal: BMC Genomics, 19(1): 314 (2018)
DOI :
10.1186/s12864-018-4699-5 Links:
PubMed | Abstract
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( Related study: none )
Click on each trait to browse further along the related trait ontology tree
Click on each chromosome number to find the detailed QTL information on that chromosome
Number of QTL/association reported by traits:
QTL for Dry matter intake
Chr.4 : Asso:154607 .
QTL for Residual feed intake
Chr.1 : Asso:154616 . Chr.3 : Asso:154612 . Chr.4 : Asso:154608 . Chr.5 : Asso:154613 . Chr.7 : Asso:154614 . Chr.8 : Asso:154611 . Chr.11 : Asso:154615 . Chr.14 : Asso:154617 . Chr.16 : Asso:154609 , Asso:154610 .
QTL for Pregnancy rate
Chr.1 : Asso:154618 . Chr.3 : Asso:154623 . Chr.5 : Asso:154625 . Chr.6 : Asso:154635 , Asso:154637 . Chr.7 : Asso:154645 . Chr.8 : Asso:154647 . Chr.9 : Asso:154650 . Chr.12 : Asso:154655 . Chr.14 : Asso:154660 .
QTL for Length of productive life
Chr.1 : Asso:154619 . Chr.2 : Asso:154622 . Chr.4 : Asso:154628 , Asso:154629 . Chr.5 : Asso:154621 , Asso:154632 , Asso:154634 . Chr.6 : Asso:154636 , Asso:154638 . Chr.7 : Asso:154643 , Asso:154644 , Asso:154646 . Chr.8 : Asso:154649 . Chr.9 : Asso:154651 , Asso:154653 . Chr.12 : Asso:154657 .
QTL for Net merit
Chr.1 : Asso:154620 . Chr.3 : Asso:154624 , Asso:154626 . Chr.4 : Asso:154627 . Chr.5 : Asso:154631 , Asso:154630 , Asso:154633 . Chr.7 : Asso:154641 , Asso:154642 . Chr.8 : Asso:154648 . Chr.9 : Asso:154652 . Chr.10 : Asso:154654 . Chr.12 : Asso:154656 .
QTL for Milk protein percentage
Chr.6 : Asso:154639 .
QTL for Milk fat percentage
Chr.7 : Asso:154640 .
QTL for Somatic cell score
Chr.12 : Asso:154658 , Asso:154659 .
QTL for Conception rate
Chr.1 : Asso:160535 , Asso:160536 . Chr.2 : Asso:160537 . Chr.5 : Asso:160538 , Asso:160539 . Chr.7 : Asso:160540 , Asso:160541 . Chr.8 : Asso:160542 . Chr.12 : Asso:160543 .
QTL/association Reported by chromosomes:
Chr.1 (6) ,
Chr.2 (2) ,
Chr.3 (4) ,
Chr.4 (5) ,
Chr.5 (10) ,
Chr.6 (5) ,
Chr.7 (10) ,
Chr.8 (5) ,
Chr.9 (4) ,
Chr.10 (1) ,
Chr.11 (1) ,
Chr.12 (6) ,
Chr.14 (2) ,
Chr.16 (2) .
Number of gene-based eQTL/associations:
Cite this Dataset :
Animal QTLdb: Dataset from Zhou Y, Connor EE, Wiggans GR1, Lu Y, Tempelman RJ, Schroeder SG, Chen H, Liu GE (2018). Genome-wide copy number variant analysis reveals variants associated with 10 diverse production traits in Holstein cattle. BMC genomics, 19(1): 314;
Curated into QTLdb on 2018-05-07. Universal link to this data set:
https://www.animalgenome.org/QTLdb/supp/?t=JyMm8W3WnP
OR
Zhou Y, Connor EE, Wiggans GR1, Lu Y, Tempelman RJ, Schroeder SG, Chen H, Liu GE (2018). Genome-wide copy number variant analysis reveals variants associated with 10 diverse production traits in Holstein cattle. BMC genomics, 19(1): 314; DOI: https://dx.doi.org/10.1186/s12864-018-4699-5
